RNA id: AMCG00012510


Basic Information

Item Value
RNA id AMCG00012510
length 2493
RNA type mRNA
GC content 0.66
exon number 6
gene id AMCG00012510
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20108162 ~ 20113136 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCCCCAGGGCATCCCCAGCCTCGCGGTGGAACCTCTGCCCAGGGAGGCGGTGGCGATGGTGGTGGGCGCCCCGGAACAGCAGTGGAGGCCGGGCGGGGAGCAGCTGgaggaggggggcagggaggcGGTCCAGCTGCGGCAGGAGCTGAGCCTCAGGGACAGGCAGTGCGAGACGCTCGCCGGGGAGGCCGAGGCCCTGCGCAGCCGACTGAGGCGGAACAGTGAGATTCTGAGGGCCCTGCTGGGGAGGCAGGGTGGGGGCAGGGAGGAGGcggtggtggtggaggaggcggcccgcagagaggaggaggaagagaaggtGATGCTGGGCAGGGTGGCAAGGCTCCTGCGGGGGAGGAGTGCGAGCGAGGGAGGCCAATGGAGGGTGGTGGGAgcggacgaggaggaggaggagaagaggaaggacGGGGAtttgaagaggaggaggaaacaAGAGGGGGTGCAGAGTGTCGGCGTTGAGCACATGCGGGAACAGCTGGAGGCAGCGCGGAGGCTGGCGGAGGCACTAGAGGGGAAGGCCAGCGCAGAGAGGAGGGTGTCGGAGATCGAGGGCCACCTGGACAACATGAGGGCTGTGCTGGCCCAGTATGAGATGCGCAAGAGGAGACAGAGCTCAGCCATGGCGGACATGGAGGGACAGGTGGAGGAGACaagggggacagggagaggggacAAGGGGacaggagagaagggagagggaaACAAGTGCACCCAAGGGAATGAGTCTCTGAGGCTGAGGCTGCAGGAGGTGGAGCAGAGGCTGGAGGTGGTGAGGCAGCAAACCAAGGGCAGCGTGCCAGGGGTAGAGCTGTGGAGGGGCAGGGAGGCCTTGGGTGGCACCATCGCCGAGCTGAAGCAGCTGCTGGGGGAGggGCGCCTGCAGTCGGATTTCGTACCCCTGGAGGACCATGAGCGGTGCCGGGCATCCTGGCAGGAGAGCGTGAGGGAGCTGGAGCGCCTGGTCCTGCAGCTGACCGCCCAGAACCAGAACCTGCGGGGGCAGCTGTGCCCACTAGATCGGCCAGGCGAGCGGCAGGGGCCGAGGCAGGGGTCAAGGCAGCGGCCACCCATCAGCAGTAGGGGCTCTCGGCCCGTGTCGGTGGGGGACTTTACGGGGGAGGGAGGGGCAGTGGTGGGGAGCAGCGGCTCTGCCCAGATGAGACCCTGGAAGTCTGAGAAGGTGCTGTCGGGCGGCCAAGGGGAGCAAGGGGGACCAGGGGCAGAGCGGCAGTCAGCCGGGGGCAGGTGGGAATCAGAGCCGGATGTCATGGATTCGCTGCTGGAATTCCTCCAGGGGGCGACTGTGCACCCTAAATTTTCCCCCCAGTCTGGCCCTCCCGTTCCCATCCTTTCtgccagccctggtcctgggttGTCCTGGAGGCGCATGGGCCGTATATTCCAGACGATGTCCCCCAGGGTGTCCCCCCCTGCCCCTGGTACTGTCCAGCAGGGGAAGGAAGCACCCGCCTGCGTCTCGGTCTCCGGGGTGGTCCTCCAAGAGAGGaagctggccaggagggagaaGAAGGAAGAGGACGAGGGAAGGGGGGATGGAGACAAGACAGAGAGGATGAAACGGGAGCTGCGGCGCCTGGAGGATGACCTGAGCAGGGAGAAGGAGGTGTCCAGAAATCTCCAAGCCCAGCTGGAGATCCAGGAGGCCGAGATCCGAACCTTGGGGGACTATTTCCCACCTGACATCCTGTGGGAGGAGGCAGAAGAAGCGGGGGTTGGTGGCGGAGGGCCGGATGAGGTGGACAGGGGGCGGAAGGGAGCATTCGAGTGTCCAGCGATGAAAGAACTGTTGCAGAAGGTGGCAAGCCTATCCCTGAGGTACCAGCAGGCCCAGACCACATTGAGGACTCAATTAGAGGAGCTCCCAGAGGCCAGGCAGCGCATCCGGGCGCTGGAGGAACGTCTGGGGGAGCTGGGACAGGAGACAGTGAGCCGGGAGGAGCACCAGCGGACAGTATTGGGGCTGGAGAGTAAGGTGGCGGTTCTGCGCATTGAGGTGGAAAGGATGGAGGAGGACCTGGGCCAGAGGCGGGCGGAGGTGGAGCGTCTGCAGGCCGAGGTGGACCGGGCCTGCGGTGAGGTGCACAACCTGGAGGCTCGGGAGGATCGACGACTGGATGAGGCCCGAGCGGAGGCAGACAGGGAGGCCAAGGCCCTGCGTGGGGAAGTGGGCCGGCTGTTTGCCCAGTGCCAGGCTGCCCAGCATGAGGTGGAGGATGAGCGGAGGGGGGGCGCCAAGTTGAGCCAGCAAGTGACAGATCTGGAGGCGAGGCTTGCCAACCGGGAGAGCGAAGCCTGGGGGCTGAGAGAGAGCCTAAGGCAGCTGCAGGAGAGGGCAGACCGGCTCGAGGACTCCGGACGGGACAAGGACCACATGGGCACGATGGATGACGAGGTGCACAGCATGCTTCTGCACATCTACAGCATGCAGAGACAGGCGGTATGCTGA

Function

GO: NA

KEGG:

id description
ko00513 Various types of N-glycan biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172579 lncRNA downstream 207722 19900206 ~ 19900440 (-) True G137270
TU172553 lncRNA downstream 334076 19768128 ~ 19774086 (-) True G137248
TU172504 lncRNA downstream 473095 19626484 ~ 19635067 (-) True G137214
TU172533 lncRNA downstream 485717 19617527 ~ 19622445 (-) True G137232
TU172507 lncRNA downstream 598964 19504884 ~ 19509198 (-) False G137214
TU172738 lncRNA upstream 53939 20167075 ~ 20227959 (-) True G137384
TU172749 lncRNA upstream 88428 20201564 ~ 20201895 (-) True G137389
TU172751 lncRNA upstream 96431 20209567 ~ 20212312 (-) True G137390
TU172818 lncRNA upstream 263307 20376443 ~ 20377953 (-) True G137449
TU172844 lncRNA upstream 310251 20423387 ~ 20423680 (-) True G137472
AMCG00012506 mRNA downstream 914 20103314 ~ 20107248 (-) True AMCG00012506
AMCG00012504 mRNA downstream 47895 20036935 ~ 20060267 (-) True AMCG00012504
AMCG00012505 mRNA downstream 75097 20027347 ~ 20033065 (-) True AMCG00012505
AMCG00012501 mRNA downstream 160599 19934859 ~ 19947563 (-) True AMCG00012501
AMCG00012502 mRNA downstream 177072 19915812 ~ 19931090 (-) True AMCG00012502
AMCG00012509 mRNA upstream 758 20113894 ~ 20118565 (-) True AMCG00012509
AMCG00012508 mRNA upstream 34641 20147777 ~ 20157212 (-) True AMCG00012508
AMCG00012507 mRNA upstream 55019 20168155 ~ 20178964 (-) True AMCG00012507
AMCG00012520 mRNA upstream 179594 20292730 ~ 20297061 (-) True AMCG00012520
AMCG00012524 mRNA upstream 590293 20703429 ~ 20742998 (-) True AMCG00012524
TU172597 other downstream 197784 19904422 ~ 19910378 (-) False AMCG00012503
TU172548 other downstream 314631 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 314631 19744335 ~ 19793531 (-) False G137246
TU172487 other downstream 600768 19441927 ~ 19507394 (-) True G137199
TU172290 other downstream 1064713 19032603 ~ 19043449 (-) True AMCG00012472
TU172771 other upstream 147866 20261002 ~ 20270864 (-) True G137408
TU173042 other upstream 922027 21035163 ~ 21038431 (-) True G137608
TU173044 other upstream 926953 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 1320528 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 1383543 21496679 ~ 21502199 (-) True AMCG00012556

Expression Profile