RNA id: TU172681


Basic Information

Item Value
RNA id TU172681
length 310
lncRNA type sense_over
GC content 0.59
exon number 2
gene id AMCG00012512
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20246651 ~ 20270919 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGGGGCGGCCTGGGAGCGGCGGGGACAGAGCGCCGGTCAACAGGTTGATTTGCGGGACttgagtgtttgttttgctcGCTGTTTTAAAAAAGCCACGAAACAGTGAACCGACAACAACCAGACACAGTCGCAAACCTTTATCACCGGAGTGGCGGAGACGGAGCAGGGACGCAAACCCGCACACTGAAGTGGCAGACAGGCGGTCTGTAGtCTCCTCTCAGCGATGCACAGTGGGACAGAGTCGGGGGACCGCAGGGGGCCTCTGGACTACGGGGTCCAGATCCGCTTCATCAATGACCTGAATGaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172659 lncRNA upstream 8778 20170426 ~ 20237873 (+) True G137337
TU172660 lncRNA upstream 8778 20177081 ~ 20237873 (+) False G137337
TU172654 lncRNA upstream 18615 20165283 ~ 20228036 (+) True G137332
TU172672 lncRNA upstream 44847 20201551 ~ 20201804 (+) True G137348
TU172572 lncRNA upstream 351052 19891167 ~ 19895599 (+) True G137265
TU172701 lncRNA downstream 67172 20321606 ~ 20328824 (+) True G137364
TU172823 lncRNA downstream 165696 20420130 ~ 20422556 (+) False AMCG00012522
TU172869 lncRNA downstream 235330 20489764 ~ 20493787 (+) True AMCG00012523
TU172871 lncRNA downstream 279318 20533752 ~ 20533959 (+) True G137494
TU172927 lncRNA downstream 502596 20757030 ~ 20757264 (+) True G137539
AMCG00012514 mRNA upstream 6620 20239834 ~ 20240031 (+) True AMCG00012514
AMCG00012513 mRNA upstream 12596 20226398 ~ 20234055 (+) True AMCG00012513
AMCG00012511 mRNA upstream 111998 20133322 ~ 20134653 (+) True AMCG00012511
AMCG00012496 mRNA upstream 389948 19852153 ~ 19856703 (+) True AMCG00012496
AMCG00012497 mRNA upstream 420388 19817519 ~ 19826263 (+) True AMCG00012497
AMCG00012517 mRNA downstream 28815 20283249 ~ 20291367 (+) True AMCG00012517
AMCG00012518 mRNA downstream 46392 20300826 ~ 20327286 (+) True AMCG00012518
AMCG00012516 mRNA downstream 86938 20341372 ~ 20344646 (+) False AMCG00012516
AMCG00012515 mRNA downstream 94173 20348607 ~ 20353279 (+) True AMCG00012515
AMCG00012519 mRNA downstream 118246 20372680 ~ 20385756 (+) True AMCG00012519
TU172571 other upstream 351052 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 431034 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 1007693 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 1072230 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 1702161 18539545 ~ 18544490 (+) True AMCG00012460
TU172707 other downstream 76647 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 176491 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 176602 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 802261 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 959163 21213597 ~ 21219163 (+) True G137633

Expression Profile