RNA id: AMCG00012515


Basic Information

Item Value
RNA id AMCG00012515
length 1773
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00012515
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20348607 ~ 20353279 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGTGGTATACGTTCCTGTCAGTCGGGCTGCTGTTGGGTGCTTTTCAAACTATCCAAACAGCACAAGCAGTGAAGTAACATTTCTCACAAAAAGACGGATAAACTCATCTAAACTCATCAGATGAgcttgtttgatttatttcgTGGGTTTTTCGGGCTTCCAGGTAGCCGCTACCCCGGGGACAGGCGAAGGGATCCCTTCTTTGACAGCATGACCCATGATGGTTATGAAGAcaatgatgacgatgatgacgATGCTGAAAGGGGGTCAGGGCAGCTCTGGGATGAGGGTCTGCGGTTCGGGGTCAGTGTGGGACCGGGGGGGGTGCGGCTGCAGGAGCCTGCCGCCTTTCGGGAACTCTTCCGCGAGATGCCCAGTATCGAGGCACCCCCTCCATCGGGGGGGTTGGGCAATGGCGGTGGTCTGGGTAGGGGCGGCTCACTGAGGGACTTCATGCTGAAACACCCCGATggtccctcctcctcctctccagaCACAGGAGGAGCACCAGACAGACTACGACCCCACATGGAGGATAAAGACCTACCCTCCAGCACCCACCCCCCCATTGCACCCTGGAGCCCCTTCTCTAAGTCCTCACTCCCTTTCTCCCttttgctctctccctctccccccaaTCCTTTCATCCCTGCTTCTGTTCTTCCTTCCCCCCTGTCCTTTCCATATTCCTCTTTCTGctactccccctctctccctcttctctctctcccctatCTCTGTGTTCTGTCAGACCTGGACTCCAGAGTGTCCTCGGAGGGACTGGACACGGTGCTGTCGCCCCAGCATCCCCGGAGCAGCAAATTCTTCCAGTCTGTCACTGTCACTAAAGTGGTGTCGCCTGACGGGACAGTGGAGGAGAGGCGGACGGTACGGGACAGCCAGGGCAATGAGAAGACTACAGTGACACGGTCAGGCCCCTCGGACCGCACCCCCTCCCTCAGCCCCCAGCAGCCCCCGGGACCTGGTGTGCCTCCCTCAGACCCAGGGATGCAGGACGACTTCTCCATCTTTTCCAGGTTTTTCGGGGGATTTCGGAATCGCTAGGAAGCCtgctgggagaaggaggggTTTGGGGGAGGGCTGTGTGTTGGCATCAAGGACATCTCCAGTTGAACAAGCCCAGATTTCTGCCCAGTCCCCTGTAGTTGGCAGACTGATGCACAGGAGTCTCACAGAGGGAGAGACGTGCAGCGCGAGCCAGATACGGGCTCTGTGCTCTTTGGAACTGGATGTGGCATTGGAATAGATTGGGTGGGTGGTGGGTGGACTTggcaacatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgcgtctatgccccgcacacacacacacacacacacccaggccTCACCAACACTCACCAACAGCAGTGGCCAGTGTatgtttgccaaaaaacaaactaacaaccaacaaaaacaaaaacctgaacTGAATGTCATTGCacaactgtctctctctctctctcctcccccctcttccctctcccttgtatcaatttattttagttgtgttCTTTTGAGTTACCAACATGTACAGAAATTGCAGAGTAACCAGAATTATTTGGTGATGATGAtctatagtatttatttttgtaactgtgttgtgttgcactgACAGTGTCTCTGTGGCAGTGTCTTCAGTGTGAGACACTCCAGCTTGATTAAAGGATGTTTCTGATGCAAAATGcccccgtgtgtgtgtggggtggggggtaataCATT

Function

GO: NA

KEGG:

id description
K16220 HAX1; HCLS1-associated protein X-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172701 lncRNA upstream 19783 20321606 ~ 20328824 (+) True G137364
TU172681 lncRNA upstream 94173 20246651 ~ 20254434 (+) False AMCG00012512
TU172659 lncRNA upstream 110734 20170426 ~ 20237873 (+) True G137337
TU172823 lncRNA downstream 66851 20420130 ~ 20422556 (+) False AMCG00012522
TU172869 lncRNA downstream 136485 20489764 ~ 20493787 (+) True AMCG00012523
TU172871 lncRNA downstream 180473 20533752 ~ 20533959 (+) True G137494
TU172927 lncRNA downstream 403751 20757030 ~ 20757264 (+) True G137539
TU172996 lncRNA downstream 648689 21001968 ~ 21039749 (+) False AMCG00012539
AMCG00012516 mRNA upstream 3961 20341372 ~ 20344646 (+) False AMCG00012516
AMCG00012518 mRNA upstream 21321 20300826 ~ 20327286 (+) True AMCG00012518
AMCG00012517 mRNA upstream 57240 20283249 ~ 20291367 (+) True AMCG00012517
AMCG00012512 mRNA upstream 77688 20254350 ~ 20270919 (+) True AMCG00012512
AMCG00012514 mRNA upstream 108576 20239834 ~ 20240031 (+) True AMCG00012514
AMCG00012519 mRNA downstream 19401 20372680 ~ 20385756 (+) True AMCG00012519
AMCG00012522 mRNA downstream 47730 20401009 ~ 20421632 (+) True AMCG00012522
AMCG00012521 mRNA downstream 77716 20430995 ~ 20445287 (+) True AMCG00012521
AMCG00012523 mRNA downstream 127835 20481114 ~ 20493659 (+) False AMCG00012523
AMCG00012525 mRNA downstream 431340 20784619 ~ 20788119 (+) True AMCG00012525
TU172707 other upstream 7161 20331081 ~ 20341446 (+) True AMCG00012516
TU172571 other upstream 453008 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 532990 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 1109649 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 1174186 19169748 ~ 19174421 (+) True G137083
TU172848 other downstream 77646 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 77757 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 703416 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 860318 21213597 ~ 21219163 (+) True G137633
TU173085 other downstream 871462 21224741 ~ 21230836 (+) True G137636

Expression Profile