RNA id: TU172707


Basic Information

Item Value
RNA id TU172707
length 3395
RNA type TUCP
GC content 0.55
exon number 2
gene id AMCG00012516
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20331081 ~ 20344646 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGAGCAGAGCCGTAGGCAGGGATGGTGAGGGACAGTAGCGACAATCTCAGATTAAACGGCAACAACAGGCTGTCTTGCCGTCACACTGAACCACTGcggtttattttttagtttattttttttgtttttttgcttagattgttttaaatattttcatatattgaaTTGATGTAGGGGAACTGCCCATAGAAACAACAGGGAGACCAAAAGAGAGACACGAGGGACGgccgctgagagagagagacgtacACAAACACAGCAAGAAGACAAACGCAGatccacacacactcacaaaatcAGTTTAGCGCACAGTTTCgaatgaaactgaaaaggagagatcagcagaatgAAAAAAGATGAAGGCTTTGGTGAGCAGCCAGTGGAAACGAAGgatataagagagagagagagagagagagacggggacaGAGACAGTGTCAGGAGAAGAGCGGTACAACGACACGAGCAAAACAGGTAGAAGAATACCCCAATTAAGAAAACAAGGGAAAGGTGGCATTTAGATCGACCACATATTTTGGGATAGCAGGATCAAGGACCCAGAGACTACTGCACATATCTTCTGCGTGGAGCTCTAAACGCTCGGACACTGCTGGAGAGAGgggtcactgactggactggactcgaCAGCTGCACAGTCACTGACCAGACTGGACAACAAGAGAGAcgggcacacatacacacacacacacacacacacacagacacatagttGCAActggcagggagagagagaggaggagggcaCAGGAAATTTAAAACCACAAGAGCAGCAGATTGTGCCCGAAGCAGAAAGAGACGAAAAGAAAGTGACGTcaagcaaagaaaaagaaaaagagaaaaaaagaagttAAAACAAAGACGACACatcgcctcctcctcctcttcctcacccaAGGCAGCaaactacatacacacacacatacatactccaacacactcacactgacattCAGCCCCAAAACGGACACACAGAACCCTCAACACGGTCCAGATGTGTGGTCCAGCAGGCCCTGGCCAGCTGTTACCTCCGTATAACTTGAGCATTGCACAGCTTTCACCATGACTATAATGGTCAGTCACCAGAGATCTGTCTGGGAGCAGCCGGACACCTAGGGGGCAAATCTGGACATTGTTCTAAGCTGTGGAATTTATTCGTTCACAAGTTTTCTGGAAGCTTTTGTCTTCATTAAATTTTTCTGCAAGATTACAGCTCCACCGTCTGGATTTACAACAGCATTTTAATcacaaactgtttttatttttttccttcctacATTTCAGGAGAGAATTGGAacgttctgttttgtttttccacacttTTGACAATTTGGATTTATTCATTCTGGTTTTGGCTggattattttggtttgtttgtttgtttgtttgaagaaCCATCAAGCAATTGTTTGTATATAGCTCCTTTTGCGTGGCAACCCTAATTCtatatattattgcatttcCTGTGCTGAGCCAACTGATCGGACAGGGAGTGGTCTGTGGTTTGCCTGTGTGGCCACTCTGCGGTCGCTTAACTAGACACAATGGACTTGAGTGACCAGTGCTTGCCCGCCACCGGAAAGGACAGTGGGGTCCTGGCTCAGCCCACGTCCTTGACCACCAAGGCCCCAGCAGGGAAGGGAGTGTCCCCCCGTTTCTTAATCCGATCTGCCAAGTCCTACTTGGAGAATGATGACTTCCGGACCCGGCAGAGCAACCTTCACACACTGAGGAGTGTTTTTGAGGCTGGCGGCACCCCTTCCTCCCTGGGGGAGTTAGGGGAGAGGGTCAGTGGCAGGAAGGAGAATGGGGAGCGAGGAGCACCTGTCCCTGCCCAACTCAGCCCATCCCTCCCACCTGCTGCCACCCCCTCCAGAgcaggggggaagggggggattGGGGGGCTGAAGAGGAACCACAGCATGGGCTCCCTGAGGTCTGGGCAAGGGGGTAACTACAACTCCAACCCCAAGACAACCACCAACGCCATGCCAAACACAAACCCTAACCCCAagaccaacaccaacaccattGCCACCCTAAACACAAACCCTTTCCCTAAAACCAACACCAACCTCAACACAAACCCCAACTCCAAGACCAACACCGACGCCACCCCAAACGCCACCCCAAACACCACCCCCAACCCCAATCCCAACACCAAACTCAACATCAACAGCAGGCACAACACCACAGACCCCACCACGGACTGCCGCCCCTGGAGACTGGCCTACCAGAGTCGTAGCAAGAGCCTGGACATGCGGGAGGGCAGTGGGCTGGAGGCAGCACCTGGGTCCAGggtggggggaggtgtgggaCTTGGTGGGGTGCGTGGCCTGAGCCAACCATTGTGGCCCTGGGAGAGAGGAGACAGCAGCTATGTGCGCTCAGCAGGGAAAGCAGAACTGAGGAGCTGTGGCAAGGAGGGGCTGGTGGTAGGgccagaggagaggagagacggGAGGAGCCGAATCCTGCTGGTGGTGGAGCACTCTGGCAACAGCCCCTCCCTCCCTGGCCGCATCAAGCCCAGCTCGGACTCGGAGCCGACATGTCCCAAGAACGGCCTCTTCCCCTGGCAGCCACAGCCCCCCAGCTTCCCCCTCTCCCACACTGGGCCTACCAGTGGCAGCGCCCCACCCCAGAGCCTGATGGGAGGGGAGCTTGGGGGGGTGCGGAGCCTGGCCAGAGGTGGGGGGCACCTCAATAGTAAAGATAACGAGAAGGAGAACAGACACGGCACCCCCAGACCCAGGCAGCCCCCCCCGGTGTCGAACAAACCTACCCCCTCCATGGGGACGGGGAGCCCGGCTTGGACTGTGCCCTCCCTGCTGCCCCAGCCCCAGCCTGAGCCATTGGTGCCAGAGAGGGGCCCCACACGCACGTTCTCCAAGGCTGGGGACAGGAGAGAGGAGGTTCTGTCCTGGCAGACGCAGCGAGGGCCCCAGGAGGTGTTCACAACGGAAATTGTGTCCCGCAGTAACGCTTTGGAATCCAAGCAGGAAGGAGTGGGAGAGGTGACCCCTAAAACTCAGGCCTTctccttttcttcctcctcttcctctttcacTTCCAGGCCCGAaggagggaagggggggggcaGTCCCGTCCATCTTGGCAGCCTTTCTGGCTCGGTGCGGAACAGAATTCATCGGTTCGAGACGCTAGCCCAGCAGAGCCAGGGTCCAAGACCTGGCCAGCCCACAGACCGGCGCCCCCTGGGCCAGACCTCCTTCTCCACCTTCCCCTTCTCCCACTCGTGGGGGGGGCACGCTGTCTCCGAGCCCGAGCCATCCCGTAGCAGCCCGGCCGTGCAGAAGAGCGGCTCTGACAGTGCGCTTGGAGAccgcagggagagggagagggagaggcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172701 lncRNA upstream 2257 20321606 ~ 20328824 (+) True G137364
TU172681 lncRNA upstream 76647 20246651 ~ 20254434 (+) False AMCG00012512
TU172659 lncRNA upstream 93208 20170426 ~ 20237873 (+) True G137337
TU172660 lncRNA upstream 93208 20177081 ~ 20237873 (+) False G137337
TU172654 lncRNA upstream 103045 20165283 ~ 20228036 (+) True G137332
TU172823 lncRNA downstream 78684 20420130 ~ 20422556 (+) False AMCG00012522
TU172869 lncRNA downstream 148318 20489764 ~ 20493787 (+) True AMCG00012523
TU172871 lncRNA downstream 192306 20533752 ~ 20533959 (+) True G137494
TU172927 lncRNA downstream 415584 20757030 ~ 20757264 (+) True G137539
TU172996 lncRNA downstream 660522 21001968 ~ 21039749 (+) False AMCG00012539
AMCG00012518 mRNA upstream 3795 20300826 ~ 20327286 (+) True AMCG00012518
AMCG00012517 mRNA upstream 39714 20283249 ~ 20291367 (+) True AMCG00012517
AMCG00012512 mRNA upstream 60162 20254350 ~ 20270919 (+) True AMCG00012512
AMCG00012514 mRNA upstream 91050 20239834 ~ 20240031 (+) True AMCG00012514
AMCG00012513 mRNA upstream 97026 20226398 ~ 20234055 (+) True AMCG00012513
AMCG00012515 mRNA downstream 7161 20348607 ~ 20353279 (+) True AMCG00012515
AMCG00012519 mRNA downstream 31234 20372680 ~ 20385756 (+) True AMCG00012519
AMCG00012522 mRNA downstream 59563 20401009 ~ 20421632 (+) True AMCG00012522
AMCG00012521 mRNA downstream 89549 20430995 ~ 20445287 (+) True AMCG00012521
AMCG00012523 mRNA downstream 139668 20481114 ~ 20493659 (+) False AMCG00012523
TU172571 other upstream 435482 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 515464 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 1092123 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 1156660 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 1786591 18539545 ~ 18544490 (+) True AMCG00012460
TU172848 other downstream 89479 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 89590 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 715249 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 872151 21213597 ~ 21219163 (+) True G137633
TU173085 other downstream 883295 21224741 ~ 21230836 (+) True G137636

Expression Profile