RNA id: AMCG00012517


Basic Information

Item Value
RNA id AMCG00012517
length 2455
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00012517
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20283249 ~ 20291367 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCAGAGCGCTTTTTGTGGCGAGCCTGTACGAGCTGGGATCAAGATACATGGCCATAAATGGTGATAAAGAAGGTACCCGACGCCTGCGTCTCACTCTGCAGGATCAGAACCAGCCAAATTGGACCCAGGAGCAGCACAGGAGAAAGCCAATCGGAAGAGCCTTTGCCCTGGTCCAGCCAGCCAATGACGGGGAGACCTTGAGCTCTGAGCCAATCAAGCCTGGAGAAGAGAAGGTTGAGGTCATAAAGGTGTACCTGGAGGCACGGAAGCAGGATCAGGAGCAGCACGACAGGAACATCAAGATGCTGTCGGACGAGGTCTCGCACATCCAGGAGGTCAGGTACTGTCTGAAGAACCTGAGGCAGCAGATGGAGGCCAGGAACAGTGGCAAGAATGGACAATACAAGaCCAATGGCTACAGAGTTCCTCAGCCGAGCAGCCAATCGTCCGTCTCCAACTGCGCAGTGGGCGGGGCCGCTCCACAGACAAAGGAGTGGGAGGAGGGGGTGCTCTCGGAGAGGGAGAGCGACCAGATGAGGGAGCTGACCCGCCGGCTCTACGGGCAGTTCCAGACCAAGCTGCAGGAGGCGGAGCACCGGCACCAGGAGGAGAGAGCCAGGCTGGAGGTGGAGTCCAGCGAGATGCGGCAGCAGCTGTGCCAGCAGGGGGAGTCCCTGCAGCAAGCGGAGGAGGAACTGGGTGAGAGGGATGCCCGCATCGGTGAACTGAGCCGCCTCCTCTCTGGCATGGAGGTGGAGCAGCGCACCCTACTggagaggatgagagagagcgagggggaGCTACAGCAGCTACGCACACTGAGGGATGAGGGCCGAGCCAAGGAGGAGAGGTCGGAAGAGCTGGAGAAGGAGCTGGCCATCCTGAAGGAGAAGATCCACCACCTGGACGACATGCTGAAGTGCCAGCAGCGCAAAGTCAGACACATGATCGAGCAGCTGCAGAACTCACGGACGGTGATCCAGGAGAGAGACCGCGTGATCCGGGAGCTGCAGGAGAAGGTGGCATTCCTGGAGGCTGAGAACCGTGAAATGCACGACCAGATGGACCACTTCCTGTCCCATCGCAGAGCTGCCCCCAGCACGTCCGAGAGGAACTCCAAAATCGTGTACAGCAAGCCGCTGACCCCCAGCTCGACCTCCAAGACTCTGCCCTTCATCAAGGTCATCGAGATCAAGTCGTgagcggagagagggagagagactgatGTGAAGGCATCATGCAAAGgacacaagagagagagagagaggaggaaaatacaaacctggacaaaaatgaaaaaactaagatcatatttaatttattcatgtgCTTTGTGGGTGTGTGATCTGGAgatgaaagagaaaatgtgaGTGAGTTGTAAGGTGGTAGGGTGGAGGCGGGGGGCACAAGGGGGTCATACcagacatctctctctccctctgcattCTCGCCGGTTCTGTCCCTCTTGTTTTTGTCCCGTGGGTGAGGATTGCGCCCTGACACACTCCCTGGAAACCTGTCCGTAACCCCGTACCCCTGGCGACTGGCTGCCACAAACCTCAACTGCCCTGCTCTGCACTCGCTCCGGTGGTGAGCACTGGACGTCAGCGCATGGAAGACAATTCTCCAGTCATTGTTGTTACTGTTAAACatggacattttatttctttttttatgcatttgtttttgatgtctttttgtttgtttgctttccttttGTACACGTCCAGGCTAGATATTGAAAGTGTCTCGGGTtttcaaagctttctttttGCTCTGGAAATTAACCTGCTCTTGGACCTGAAGGAAATTACTTTACAAAACTTTCTAAATGTGTACAATCCTATGAACCTCACCGAACACCAGTGATGCCCAAACTGGAGGAGGttgtggaagtgtgtgtgtgtgtgtgtgtcttggcaCAAGTCTTGTATACAAACTTAACAGGAATGCCTGCCCCAGTGCAATGCTCAACTGCTGTAGCActcatgtatttattctaaattatttgatactgtactatactgtatgtgtgtgtgtctgtgtctccatGGAGAAAAAGGGTGGGGGGaggttattttcaaaagctcaCTGAAGGAGTCCAAACCTGGCTGTAGTCGAACACACATCCCTACAGCGGGGGAGAGATTTCTCTTTATCTAATTTTCTTCCAAGTCTGATTTTACAATCTTCCAGTCTGTACCTATTGCACACTCTTTcccttatctctctctctatctccaaTAATccttattaatttgaaaataacccCCCCACCAGTTTATGTAACACTGTTTCTCATAGCGCTGTAAAGAATTTGGCATGTACAAATCGCCTGCATTCTGTGAATTCAAATAAACCGGTTTACACCATCAGGCCCGAGTGCACTCACATGATTAACCAGGCCGTGTCATGTTATGCAAAGGtgaatttaattcaaattactgGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172681 lncRNA upstream 28815 20246651 ~ 20254434 (+) False AMCG00012512
TU172659 lncRNA upstream 45376 20170426 ~ 20237873 (+) True G137337
TU172660 lncRNA upstream 45376 20177081 ~ 20237873 (+) False G137337
TU172654 lncRNA upstream 55213 20165283 ~ 20228036 (+) True G137332
TU172672 lncRNA upstream 81445 20201551 ~ 20201804 (+) True G137348
TU172701 lncRNA downstream 30239 20321606 ~ 20328824 (+) True G137364
TU172823 lncRNA downstream 128763 20420130 ~ 20422556 (+) False AMCG00012522
TU172869 lncRNA downstream 198397 20489764 ~ 20493787 (+) True AMCG00012523
TU172871 lncRNA downstream 242385 20533752 ~ 20533959 (+) True G137494
TU172927 lncRNA downstream 465663 20757030 ~ 20757264 (+) True G137539
AMCG00012512 mRNA upstream 12330 20254350 ~ 20270919 (+) True AMCG00012512
AMCG00012514 mRNA upstream 43218 20239834 ~ 20240031 (+) True AMCG00012514
AMCG00012513 mRNA upstream 49194 20226398 ~ 20234055 (+) True AMCG00012513
AMCG00012511 mRNA upstream 148596 20133322 ~ 20134653 (+) True AMCG00012511
AMCG00012496 mRNA upstream 426546 19852153 ~ 19856703 (+) True AMCG00012496
AMCG00012518 mRNA downstream 9459 20300826 ~ 20327286 (+) True AMCG00012518
AMCG00012516 mRNA downstream 50005 20341372 ~ 20344646 (+) False AMCG00012516
AMCG00012515 mRNA downstream 57240 20348607 ~ 20353279 (+) True AMCG00012515
AMCG00012519 mRNA downstream 81313 20372680 ~ 20385756 (+) True AMCG00012519
AMCG00012522 mRNA downstream 109642 20401009 ~ 20421632 (+) True AMCG00012522
TU172571 other upstream 387650 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 467632 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 1044291 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 1108828 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 1738759 18539545 ~ 18544490 (+) True AMCG00012460
TU172707 other downstream 39714 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 139558 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 139669 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 765328 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 922230 21213597 ~ 21219163 (+) True G137633

Expression Profile