RNA id: AMCG00012518


Basic Information

Item Value
RNA id AMCG00012518
length 3671
RNA type mRNA
GC content 0.61
exon number 28
gene id AMCG00012518
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20300826 ~ 20327286 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGTAAGATGCACAAATGTCTTGACGGGGGTTGTGTTCTCTTGCAGGTGTTTTCCTTGTAAATACTgttatttgtatatactgtaaatgATGACATCGGTGGGCAGCAGCCGAGCCCGGGGAAACTGGGAGCAGACACAGACGcagacacacagccagacaCAGCACAAGCAGAGGCCCCAGGCCACTGCAGAGCAGATTCGACTCGCACAGATGATTTCCGACCACAATGATGCCGACTTTGAGGAGAAAGTGAAGCAGCTGATTGACATCACAGGAAAGAACCAAGATGAGTCTATGATTGCCCTACATGATTGCAATGGGGATGTAAACAGAGCTATCAACGTCCTCCTGGAGGGTAATCCGGATACTGACTCATGGGAGATGGTTGGGAAAAAGAAGGGTGTGTCGGGACAGAAGGACAGTGGACAGACGGAGACGAGCGAGGAGGGGAAGGAgaacagggacagagagagggatgtggCACGCCGCCGTGGGGGGCCCCCCAGGCGGGGCCGAGGAGCGAGCCGGGGCCGTGAGTtCCGGGGTCAGGAAAATGGACTGGATGGAGCAAAGGCAGGTGGACCGCCAGGCCGGGGAACAGAGCGTGGGGGCTCTGGCCGGCGAGGGAGCAGGTTTTCGGCCCAGGGCATGGGCCAGAATGATAAGGGGTCAAGATTTGATTTTTCGGGAGACGACAGGACCTTCAACCCTGCCGACTATGCCGAGCCCTCCCACAACGAGGACAGCTATGGCGGCGGCAACACATGGAACAACACGGGCAGCTTCGAACCCGATGATGGAACCAGGCTTGAATTCACTGGGAGTGAGGGAACAAATTATCCCAGAAAATTTGAGTCTGATTCTGgtGCTTGGAGGACAGCCACGGACGAGTGGGGCACGGAGGACTGGAATGAAGATCTTTCAGAGACCAAGATATTCACCGCTTCCAGCGTTGCCTCCATGCCCCTACCCCCTGAGAGTGTGACCATCACAGCTGGACAGAGgattgacctggctgtgctgctgggTAAGACGCCACCCTCCTCGTCTGAGAGCGAGGCAGCCCCACTGGAGCCGCCCCCACCGGCATCGCTGTCCCAATCGCTGGTGTTCAGCAACTCCAAGCAGGGCTCTCTTTCCCAGCCCTCATCCGGCACGCCCTTCTCCCAGCACAGCATGgCCAGCATGCTTGCGAAGAGCTTCAGTGATGTGGGGGAGCCCAAGGGGAGCACCGGAGGGTCGACCAGCGGCTCCCAGTTCCTGGAGCAGTTCAAGACAGCCCAGGCACTGGCCCAGCTGGCTGCACAGCACTCCCAGACGCCCCCGCCTAATGCTGGCCCCccgccctcctcctcttcctgggACACTGCGCCTTCTGCACTGGGGCAGTATGACATGAAAGCCCAGTCAGAGCCCACAGTCAACAGCCCGTTTGGCAAGCGCCAGCCCTACCAGCCCTCTTCCTCCATGATGGATGTGTTCCTGCAGCAGGACAAGGTTGCCGGCGGCCCCCGTGGCACCGCCCCCCTCCTCGCCGTTGCCCAAGGCCCTCCCACCACCCTCCTCGGCCAGCACCGCTCCCTCAGGACAGCAGATGTCACCTGGCTCTTCGGACAACCAATCCCCGCTCTGGCCGTGGAGATGCCGGGCACAGCTGACATCCCGGGGCTAAACCTGCAGTTTGGGGCGCTCCAGTTTGGGTCAGAACCTGTGCTGCCGGAGTACGAGTCGGTACCGGCAACCAGCGCACCGGCCAGCCAACCCCAGAATGCCCTGTACACCAGCGCAGCCAGTGACTCTGCGCCAACAATCTCGTCCAACCCCAGCCAGGATTCTGGGTACCAGAGCAGCGCCCTCTCAGGTGGGGGGCCCTCTTACCCGGCACAGACGGTGGCGTCGAGCAGCTCCCAGCCCACCTTGTACGAGCAGCGCTCCACGCAGACCCGCCGATTCCCCTCTTCGGTCTCTTCCTCCCCCCAGAAGGATCTCCAGCCCAGCAAGAATGGTTTTGGATCCATACAGACGACGCAGTCAGTGGAAGctgcagCAGGCTCTGCAGTGAAGTCGATCTCCGACTCACCGGTGGTGACCAGCATCTCCTCCCTGACCGACAGCGTGTCGggctcctcctccctcctcaccaCGGCCAATCAGACGCCCCACAGCACGCTGAGTCATGGCGAGGACCTGCCCGCCAGctccgcccccccaccccatagCAActcCCTGTCCTCTCAGCAGAGCACTCTCACCCCCTCCTCTACAGGACGAGCTTCTAACTCCACTTTACTGCACACGAGTGTGGATAGTGAAGCCAGCCTGCACTCCTCCTCCAGCTCGTTCCCTTCTTCCTCGGCCGGAGGTGGCGTGTGCGTTTCCAATGTGGTGTCGGCAGTTGCAGCTGCTCCACCTCCACCCCCAACGGTCAGCACCGTGTCCTCGGCTACACTGGGCCAAGTCAGCAGCCTGACCATGGGCTTGGCTGCCACCACATCTGCCCCGCCCTCGTccaactcctcctcctctgcccgCAGCTCGGCCGCCTCTTCAGGCAAGGCCCCCCCGAACCTGCCCCCTGGGGTGCCCCCCCTGCTGCCCAACCCCTACATCATGGCCCCTGGCCTGCTGCACGCCTACCCACCTCAGGTGTACGGGTACGATGACCTGCAGATGCTCCAGACTAGGATACCTCTGGATTATTACAGCATCCCCTTTGCCACTCCTACCACAGCCCTCACTGGCAGAGATGGCAGCTTGACCAACAACCCCTACTCTGCAGGAGACCTGTCCAAGTTCGGGCGAGGAGACGCATCCTCCCCGGCACCGGCTACCACGCTCGCCCAGCCGCAGCAGAGCCAAACCCAGAGCCACCACGGCACCCAGCAGCCCTTCCTCAACCCCGCCCTGCCGCCCGGCTATAGCTACACCAGCCTGCCGTACTACACCGGTGTTCCCGGCCTCCCCAACACCTTCCAGTATGGACCTGCCATGTTTCCGGTGAGTGCGAGGCGGGGTGGGGAGTACGGAGAGGGCAACGTCTCTTGTGGTCTTGTTCTGTGCTTTGGGGTACTGGTCGGCGTTACTGACCGCAgtgtccacccccccccccaggtgGCTCCTACCTCGTCGAAGCAGCATGGTGTGAACGTCAGTGTCAACGCCTCGGCCACGCCCTTCCAGCAGGCCAGTGGCTACGGCTCCCATGGCTACAGCACAGGAGTTTCTGTGACATCCAGCAACACTGGGGTTCCTGATATTTCAGGGTCTGTTTACACAAAGACTCAGTCATTTGAGAAGCAAGGTTTCCACACTGGCACTCCAACCGCCTCCTTCAACCTGCCCTCGGCGCTGGGCAGCGGGGGCCCGATGAACCCCCCCACTGCAGCCGGCTACCCCCCTGCCCCCTTCATGCACATCCTGGCCCCGCACCAGCAGCCCCACTCCCAGATCCTACACCACCACCTGCAGCAGGACGGCCAGAGCGGCAGCGGGCAGCGCAGCCAGGGCACCTCGATCCAGCAGAAATCTCAAGTCAACAAGACTGCTTACAACAGCTACAACTGGGGGGCCAACTGAGGACACGCCTCCCCGTCTGAACTGACTGACCTGCAACCGAGAAACCCAGCTTCCTCCTTTCTGACCCCCTCTCCTGCGGTACCATTAACTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172681 lncRNA upstream 46392 20246651 ~ 20254434 (+) False AMCG00012512
TU172659 lncRNA upstream 62953 20170426 ~ 20237873 (+) True G137337
TU172660 lncRNA upstream 62953 20177081 ~ 20237873 (+) False G137337
TU172654 lncRNA upstream 72790 20165283 ~ 20228036 (+) True G137332
TU172823 lncRNA downstream 92844 20420130 ~ 20422556 (+) False AMCG00012522
TU172869 lncRNA downstream 162478 20489764 ~ 20493787 (+) True AMCG00012523
TU172871 lncRNA downstream 206466 20533752 ~ 20533959 (+) True G137494
TU172927 lncRNA downstream 429744 20757030 ~ 20757264 (+) True G137539
TU172996 lncRNA downstream 674682 21001968 ~ 21039749 (+) False AMCG00012539
AMCG00012517 mRNA upstream 9459 20283249 ~ 20291367 (+) True AMCG00012517
AMCG00012512 mRNA upstream 29907 20254350 ~ 20270919 (+) True AMCG00012512
AMCG00012514 mRNA upstream 60795 20239834 ~ 20240031 (+) True AMCG00012514
AMCG00012513 mRNA upstream 66771 20226398 ~ 20234055 (+) True AMCG00012513
AMCG00012511 mRNA upstream 166173 20133322 ~ 20134653 (+) True AMCG00012511
AMCG00012516 mRNA downstream 14086 20341372 ~ 20344646 (+) False AMCG00012516
AMCG00012515 mRNA downstream 21321 20348607 ~ 20353279 (+) True AMCG00012515
AMCG00012519 mRNA downstream 45394 20372680 ~ 20385756 (+) True AMCG00012519
AMCG00012522 mRNA downstream 73723 20401009 ~ 20421632 (+) True AMCG00012522
AMCG00012521 mRNA downstream 103709 20430995 ~ 20445287 (+) True AMCG00012521
TU172571 other upstream 405227 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 485209 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 1061868 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 1126405 19169748 ~ 19174421 (+) True G137083
TU172158 other upstream 1756336 18539545 ~ 18544490 (+) True AMCG00012460
TU172707 other downstream 3795 20331081 ~ 20341446 (+) True AMCG00012516
TU172848 other downstream 103639 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 103750 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 729409 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 886311 21213597 ~ 21219163 (+) True G137633

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027688 False 5066 mRNA 0.50 27 NC_007130.7 7759354 ~ 7797952 (+)