RNA id: AMCG00012519


Basic Information

Item Value
RNA id AMCG00012519
length 2442
RNA type mRNA
GC content 0.56
exon number 12
gene id AMCG00012519
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20372680 ~ 20385756 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGATGGAGCGAGCCAGGCGGGGGCTGAGGCTGAGCAGCCCGCTGGCAAGAGAGTGCCTTAGTGAGTTTATGGGCACGTTTGTCCTGCTGGTGAGTACACTGCAACTGGCCCGAGGCGTGATGTCGGCCATGTACCTGTGCATGGGGGTCTCAGGTGCTCACCTGAACCCTGCAGTGTCCCTGAGTTTCTGTGTGCTGGGGCGGCTGCAGTGGCCCCGGCTGCCCTGCTATGCTGTGGTCCAGGTGCTGGGCGCCTTCACAGCCTCGGCCGTGGTCTTCCTGCAGTACTACGACGCGATCATGGATTTCTCGGGGGGCAACTTGACAGTGACTGGCCCCACAGAGACGGCGTCCATCTTCGCCACCtacccctccccccacctcaGCCTGTCTAGCAGCTTCATCGACCAGGTCCGCCAGCACACACACGCCCTCACAGCCCGCACCCTCACACCCTCACAGCCCGCATGGCCACGCCCATGCCCACACAGCCTCATTGTCCGCTACGACGCCCTACTCTCTGCTATGATGCACCCCATTGTGATCGGCACGGCTACGCTGTTGCTCTGCATCCTGCCCCTTGATGACAAGCTGAACAGCCCTGCCCCCCCCGGCCTGGTGCCCCCACTGGCTGCCGTGGTGGTGCTGGGCATCTCCATGTCGATGAGTGCCAACTGCGGGGCCGCCATTAACCCGGCGCGTGACCTGGGGCCCCGGCTGTTCACCCTGACCGCAGGCTGGGGGCCTGAGGTTTTCACggcATACTCTCACTGGTGGTGGGTACCATTAGTCGCCCCAATGCTTGGTGGAGTTCTGGGCTCACTGCTTTATCTCGTGTTCATCCAGTGGCACCTCCTTGACCCGGACAGTCACCCTGGCACAGAACCAGAACCCGGGTCTGAACCCATGGCCAAAGGACTGTTCGGCTGCGGTGGGGTTGCCCAGGTGACAACGAGCAGCGAGACAAAGGGGCAGTACCTGTCAATCAACCTGGCCTTCGCCCTGGGGGTCACATTCGCCGTGTATGCCTCCCGCGGTGTCTCAGCGGCCCACCTGAACCCTGCTGTCTCTCTCAGCCTGTGTGTTCTGGGCAAGCACCAGTGGAAACGCCTGCCGTTCTATGTCTTCTTCCAACTGCTGGGGTCCTTCCTTGCCGCGGCAACAGTATATGCTTTGTACTATGaGGCGATAATGGAATACAGTCAGGGCAATCTGACAGTGTCTGGCCCCAGAGCCACGGCTGGGATCTTCGCCACCTACCCCTCTGACTACCTCAGCATCTGGAGTGGTTTCCTGGATCAGGTGGTGGGCACTGCGGCACTGTTGCTGTGTGTGCTGGCAGTAGGGGATGAGCGGAACAGCGCCCCCCCCGCAGGGCTGGAGCCGGTGCTGGTGGGCCTGGCAGTGCTGGGCATTGGCATCTCCATGGGGGGCAACTGTGGGTACCCCCTGAACCCCGCCCGTGACCTGGGGCCCCGCCTTTTCACGTTCATCGCAGGCTGGGGGGGACAGGTCTTCACGGCGGGTGGGGGCTGGTGGTGGGTGCCTCTGGTGGCCCCCCTGCTTGGCGCTCTGACGGGCACAGCACTGTACCAGCTGCTGGTGGAGTTCCATCACCCCCCCCATGAACTCGACCCCCCTGGCACACAGGCCAATGAAGTGGGCCTAGCGCTGGAGGTGGAAAGGGAGGCCGGGGAGGAGAAGGGGGTCAGAAATGGGGGGGAGGTGGGCGACGAGCGCATAATCAACCGCCTCtaagtgagtgtgtgagaggtGGGGGGTCAGAGGCTTGATactcaaaaaaatgtaattatgtatagTTTCCATTGGCTTCCATGTATCTCAGCTAATACAGGACTGTGATCTAAACACTGGGCCctataatatactatactatatttgCTTTAGTTTTACTGCCAGAGAATTTGTACCGCCAGTGTTCAGTAGCCACAGCCCCGCTGTGCTCAGTGATATCTCTCATTAGTGTTCATGTGATCACTATGCTTGCATTATAATTGAagtctgattttaatttctttcatcACTGCAACGAACAAACACTTGTAATTGGCATTGCATGTGAtgttattgcattgtattgttatATTGCATTTGTTATCCTACCCCAAATAAAGATTCTAATAAAAAACGTGTATAGTATAGTTATGTGTCATGCATATTATGCACccaacattaaatgtattttctattttgttacaGGGTTTTGTGGGTAAGCTTTAtttcttttgtgtgtatttctgtcaCACCGGCGGCCTGTGCGGTGTGTGAGCTGTGTCGTGTGCATGTTGCTGACTGTCcgaaataatacataatacaagcgtgtgtcaataataataatattatgaagctgtgcagtgtgtagtgggAGAGAAAATCATATATACTGTTTGATCTGGTGTTTGTGTGTCGTTTTACAGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K09878 AQP10; aquaporin-10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172701 lncRNA upstream 43856 20321606 ~ 20328824 (+) True G137364
TU172681 lncRNA upstream 118246 20246651 ~ 20254434 (+) False AMCG00012512
TU172659 lncRNA upstream 134807 20170426 ~ 20237873 (+) True G137337
TU172823 lncRNA downstream 34374 20420130 ~ 20422556 (+) False AMCG00012522
TU172869 lncRNA downstream 104008 20489764 ~ 20493787 (+) True AMCG00012523
TU172871 lncRNA downstream 147996 20533752 ~ 20533959 (+) True G137494
TU172927 lncRNA downstream 371274 20757030 ~ 20757264 (+) True G137539
TU172996 lncRNA downstream 616212 21001968 ~ 21039749 (+) False AMCG00012539
AMCG00012515 mRNA upstream 19401 20348607 ~ 20353279 (+) True AMCG00012515
AMCG00012516 mRNA upstream 28034 20341372 ~ 20344646 (+) False AMCG00012516
AMCG00012518 mRNA upstream 45394 20300826 ~ 20327286 (+) True AMCG00012518
AMCG00012517 mRNA upstream 81313 20283249 ~ 20291367 (+) True AMCG00012517
AMCG00012512 mRNA upstream 101761 20254350 ~ 20270919 (+) True AMCG00012512
AMCG00012522 mRNA downstream 15253 20401009 ~ 20421632 (+) True AMCG00012522
AMCG00012521 mRNA downstream 45239 20430995 ~ 20445287 (+) True AMCG00012521
AMCG00012523 mRNA downstream 95358 20481114 ~ 20493659 (+) False AMCG00012523
AMCG00012525 mRNA downstream 398863 20784619 ~ 20788119 (+) True AMCG00012525
AMCG00012532 mRNA downstream 433494 20819250 ~ 20829362 (+) True AMCG00012532
TU172707 other upstream 31234 20331081 ~ 20341446 (+) True AMCG00012516
TU172571 other upstream 477081 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 557063 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 1133722 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 1198259 19169748 ~ 19174421 (+) True G137083
TU172848 other downstream 45169 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 45280 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 670939 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 827841 21213597 ~ 21219163 (+) True G137633
TU173085 other downstream 838985 21224741 ~ 21230836 (+) True G137636

Expression Profile