RNA id: AMCG00012522


Basic Information

Item Value
RNA id AMCG00012522
length 2940
RNA type mRNA
GC content 0.62
exon number 23
gene id AMCG00012522
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20401009 ~ 20422556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGGCCCTAACCCCGTGGATGTTAcagaggaggagaggagagtaCGCGCCAATGATCGGGAGTACAATGAGAAGTTCCAGTACGCGAATAACTGCATCATGACCTCCAAGTACAGCATCATCACTTTCCTGCCTGTCAATCTCTTTGAGCAGTTCCAGGAAGTGGCCAACACCTACTTCCTGTTCCTGCTCATTCTGCAGCTGATCCCCCAGATCTCGTCGCTCTCCTGGTTCACCACCATCGTGCCTTTAGTCCTGGTGCTGAGTATCACTGCGGTGAAGGACGCCACTGACGACTACCTCGGAGATGCTGAGAGGCTGGCCCAGTTCAACGggGAGGTGATCTGTGAGCCTCCCAATAACAAGCTGGACCGGTTCTGTGGGACTCTGTACTGGAAGGACAGCAAGTACAGCCTTAGCAACCAGAACATGCTGCTGAGGGGCTGTGTGCTCCGCAATACGGAGAGCTGCTATGGCCTGGTCATCTTCGCAGgGCCCGACACTAAGCTGATGCAGAACAGTGGACGCACCAAGTTTAAGAGAACGAGTATCGACCGGCTGATGAACACTCTGGTGCTCTGGATCTTCGGGTTCCTGGTGTGTATGGGTGTGATCCTGGCGATTGGGAACGCGGTGTGGGAGAAGGAGGTGGGCTCGCTCTTCCAGCTCTACTTGCCCTGGGACCAGCCTGTTGACAACTTCCTGTTCTCTGGCTTCCTGTCCTTCTGGTCCTACGTCATCATCCTCAACACCGTGGTGCCCATCTCCCTCTATGTCAGtgtggaggTGATCAGACTGGGCCACAGCTATTTCATTAACTGGGACCGGCGCATGTTCTGCCAGCGCAGCCAGACCCCGGCTGAGGCGCGAAGCACCACCCTGAACGAGGAGCTGGGCCAAGTGGAGTACATCTTCTCCGACAAGACTGGTACCCTCACCCAGAACATCATGAGCTTCAACAAGTGCTCCATCAACGGCAAGGCCTACGGGGAGGTGATGGACACACTGGGGTCGCAACCCAAAATGAGAACAAGAGCAGAGCCGCTGGATTTCTCCTTTAACCCCCTGGCTGACGGCAGGTTCACCTTCTATGATGCGTCCCTGCTGGAGGCAGTGCACCTGGGCGAGCCAGCCGCCTGCGAGTTCTTCAGGCTGCTGCTGCACCCCTGCAACCAGGAGCTGCTCAACATCACCTCAGACCACCTTAATGAGTACGCTGGGGACGGTCTGCGTACGTTGGTGCTGGCATACCGGGACCTGTCAGAGGAACAGTATGAGGAGTGGGCGAGGAGGCACCGCAGCGCCAGCCGGGCCACTGACTACCGAGAGGAGAGACTGGCGGCCGTGTACGAGGAAATAGAGCAGGACATGATGctccTGGGAGCCACAGCGATTGAGGACAAGCTGCAGGAGGGTGTCCCAGAGACCATCGCCATTCTGGGTCTCGCCAACATCAAGATCTGGGTCCTGACTGGAGACAAGCAGGGGCACACCGTGCAGAGCGTCAGAGAGGAGCTGCGGCGTGCCCGGGAGCGGATGCTAGAGCTGGCGCGGGCGATGGGCAACGGCTTCGACTGGGAGGAGAAGGGCGCCCCTCCCCGGCCCCCCTCCACCCTGCTGGACACCCTGCCGGGGGAGTACGCACTGATCATCAATGGGCACAGCCTGGCACACGCCCTGGAGGTGGACATGGAGCGGGAGTTTGTGGAGACCGCCTGCGCCTGCCGCGCCGTTATCTGCTGCCGGGTCACCCCCCTGCAGAAGGCCCTGGTGGTGGAGCTGGTCAAGAGGCACAAGAGAGCCGTGACACTGGCCATCGGGGACGGGGCCAACGATGTCAGCATGATCAAGACGGCCCACATTGGAGTGGGTATCAGTGGTCAGGAGGGTATCCAGGCAGTGCTGGCGTCCGACTACTCCTTCTCTCAGTTCCGCTTCCTGCAGCGCCTCCTGCTGgACGTCCCAGAGCAGCGCAGCCTGGAGTACCCCAAGCTGTACGAGCCGGGGCAGCTCAACCTGCTCTTCAACAAGCGGGAGTTCTTCATCTGCATCGCCCAGGGCATCTACACCTCCGTGGTGCTGTTCTTTGTGCCGTGTGGCGTGTTCGCCGAGGCCACGCGGGACGACGGCACCGCCCTTGCCGACTACCAGACTTTCGCCGTCACCGTGGCAACCTCCCTCGTCATCGTGGTCAGCGTGCAGTTCAGATTCGCAGgTGCAGCTCAGAACACACTGGGTCAGCCAGTGGTGTGGCTGACCATGGCCCTGTCCACTGTGATCTGCATCGTACCTGTGGTGGCCTTCCGCTTCCTCAAACTGGATCTCAAGCCCCAGCTCTCTGACACGGTGCGCTACACCCAGCTGGTGCGCAAGAAGCAGAAGCCGGGCGCCGGGGGCCGGGGGCCGCTGGGGCGGGGTGGGCGGGCGGGTTCTCGCAGGTCGGGCTACGCCTTTGCCCACCAGGAGGGCTTCGGGGAGCTCATCACCTCAGGCAAGAACATGCGGCTGAGCTCGCTGGCCCTGTCCAGCTTCACAGGCCGCCATAGCACCAGCTGGATTGACACGCTGCGCAAGAGACGCGCCCCCCCGCCCGACAGCCCCCCTCCCGAggccccctccacccccaccaccGCCTCCGCCACACCCACGCCCTCACAGACGCCCGTGCCAGAGCCCAGCCTTACTCCCACCCAGACTCCGCCTCTGCCTGGCCTCAGCCCCGCCCTCCCCACCCCGCCAGCCAGGAGCCCAGGAGCCAGCGAAGGAGGGGGCTGGGCCGCCGCTGGGCTGGGGGCAGTGCAGGCTGCGCTGGGCTGGACTAGATTTGACTGGGCtaggctgggctgggctgggctagACTACATTGGACTCGGCTGGACTGGACAAGGCTGCAGTATAATGGACTGGACTGTGCTGCCCCAGATTGCACTGTGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172701 lncRNA upstream 72185 20321606 ~ 20328824 (+) True G137364
TU172681 lncRNA upstream 146575 20246651 ~ 20254434 (+) False AMCG00012512
TU172659 lncRNA upstream 163136 20170426 ~ 20237873 (+) True G137337
TU172869 lncRNA downstream 68132 20489764 ~ 20493787 (+) True AMCG00012523
TU172871 lncRNA downstream 112120 20533752 ~ 20533959 (+) True G137494
TU172927 lncRNA downstream 335398 20757030 ~ 20757264 (+) True G137539
TU172996 lncRNA downstream 580336 21001968 ~ 21039749 (+) False AMCG00012539
TU173083 lncRNA downstream 798567 21220199 ~ 21221044 (+) True G137634
AMCG00012519 mRNA upstream 15253 20372680 ~ 20385756 (+) True AMCG00012519
AMCG00012515 mRNA upstream 47730 20348607 ~ 20353279 (+) True AMCG00012515
AMCG00012516 mRNA upstream 56363 20341372 ~ 20344646 (+) False AMCG00012516
AMCG00012518 mRNA upstream 73723 20300826 ~ 20327286 (+) True AMCG00012518
AMCG00012517 mRNA upstream 109642 20283249 ~ 20291367 (+) True AMCG00012517
AMCG00012521 mRNA downstream 9363 20430995 ~ 20445287 (+) True AMCG00012521
AMCG00012523 mRNA downstream 59482 20481114 ~ 20493659 (+) False AMCG00012523
AMCG00012525 mRNA downstream 362987 20784619 ~ 20788119 (+) True AMCG00012525
AMCG00012532 mRNA downstream 397618 20819250 ~ 20829362 (+) True AMCG00012532
AMCG00012536 mRNA downstream 412239 20833871 ~ 20839466 (+) True AMCG00012536
TU172707 other upstream 59563 20331081 ~ 20341446 (+) True AMCG00012516
TU172571 other upstream 505410 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 585392 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 1162051 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 1226588 19169748 ~ 19174421 (+) True G137083
TU172848 other downstream 9293 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 9404 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 635063 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 791965 21213597 ~ 21219163 (+) True G137633
TU173085 other downstream 803109 21224741 ~ 21230836 (+) True G137636

Expression Profile