RNA id: TU172823


Basic Information

Item Value
RNA id TU172823
length 2325
lncRNA type sense_over
GC content 0.53
exon number 2
gene id AMCG00012522
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20401009 ~ 20422556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTCAGCCCCGCCCTCCCCACCCCGCCAGCCAGGAGCCCAGGAGCCAGCGAAGGAGGGGGCTGGGCCGCCGCTGGGCTGGGGGCAGTGCAGGAGGCTCTGTTTGGTTGGAGAGGGGTGGCGGCACGCATCAGTGGAGCCAGCAGCCCTGGCCCCCCCCCCATCGCAGAGGAGCCCCCCTTCACCgagcgagagtgagagagggagagggagagagagagagacagagagagagagagagaccaggactgcactgcactgcactgcactgcactgtactgcactgcgctgtattgtactgtgctgtaataCACTATTCTGAGCCCTgactgtactctactgcactgtgtCCCTACGGAGCACTGTCCATTTCCCAGGCTGTCGGGTACCTACTGTGTTTGGTCTGATTGTTGgcttgtgtgcttgtttgttttgttgacctgagagagagagatgaggtgGAGGGACATGAGAGAGAATGACAGTAATGCAGTCCTCCCTCTCTACAGTGTGCAGTGGGTGGGACTGCTTATCTGGCacagctccctccctctcttcctccctcctttcccccctccctctctcccctctgcctctttctctccttctttcccccttcctctctccactCCCCTCCTGTCTGCTCCACTGCTCTCACAGGCTGTTTGCTGAATCAGCGCCCGATTCACTGAATAATTCCCCTATGAATtaaatctccctctccctctcctctgtttctccctccatctctctcggTACAAGGGGCAGCTCTCACAGGCCCAGTAATGTAATATGCATATATGTGCCCATCTCTGCGTGTCTCCGTCTccacctgtctctctgtctccatctccgcgtgtctctgtctctgcgtgtgtatttatgtataccACTCAGATAGTTAACTCCCTGGTAGATCAATTTCTTTACCAAGTGAAAGAGTGTGAAGAACCCCCCCCAACAGCAGCCAGAATGCTAGTCTCTGCAGAATTGTTAACGCcactctgtttgtttgttctgtagTTCAGTTTAGCTGTGTGAACAGGGCAGTGAGTGTGTGCAGAagtctccctccctttctctctctctctctctctctctccctccctttttaccctctctcttcccctccctccctctctctgtgtgctgtgtgtagtgGCTGCGTGGCTGTGCGCTATATTCTCAGTGAGAACGCTGTGCAGCACAAGCTGACCGCCACTCTGCCTCCCAGACTGCGCCATATTGGTGTACTGGGCTGGACTAGGCTGCGCTGGGCTGGACTAGATTTGACTGGGCtaggctgggctgggctgggctagACTACATTGGACTCGGCTGGACTGGACAAGGCTGCAGTATAATGGACTGGACTGTGCTGCCCCAGATTGCACTGTGCTAAACTGGGTTGGACAGCCGGATTGGGGTCTGGCATGAGCAGAGCGGGACTGGACTGGGATGTACTAGAATTAAATGGACTACACTGAACTGGTCCACACGTGAGGGGGCTGCAATGAAACTGACTGGGGTGTTTTGGGACAGGAATAGTTGAACACTCTACCGTACTGGGCTGCAGTGACCCAGGATGCTCTTTGGTGGACGGGACTGAACTGGTCTACATTGGAGAGAGGGCTGCAATGGATTGGACTGGGTTGGACTATGCTGATGTAGCACCAGGCATCCCAGTTTGGTCAAAAGACAACTGGAAATCAGAACatggggtggggtggtggggaTCACATGTGGTGGggtgatttttgtgtgtgtggggagggggtttGCTCCCTCTGCAGCCTCACAAGACTTGCTAGTGAAGGTGTTAAGGAACCTTGTTTAACCATTCTGGGACCTCAGCTGAAGAGCATCAGGAGCCAAGAAGAATTTGGTCAAAGAAGCTCGTGAGGTAAAGCATCGTTGCAGAGTCtcgttaaaaaaaattaaatcttgaaAGAGGCCCTGCAGAGTCTGCCGGGGGTTAGAAGAGGAGTCTGGCATAGAAGAGCCTCATTAAGCAACCTCGTTAAGGATGGGTGGAACCCTCATTAACCAATTAAGGACCCACCTGTGGACTTTTTTACAGGACTTTAAGAAAGGCGCTTGTTTGCCTTCTTGTTAGAAAAAGCGTGTTAAGTTCTGGCCCCCATGAGGGGTGGTTGTTTTTGCCCTTTAGAGCCTGGGGGAGGGGTAAGTCAGAGTTCAGACGTTAAACTGGAGTCACTGAAACAAGCTGATCAATAAATATACCAATGACCCTCGATCACTAGAGGGAAACGTGAGTAGTCCTGGTCTCTTATTTACTGTCAGATGGTGAAACTAACACATTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172701 lncRNA upstream 91306 20321606 ~ 20328824 (+) True G137364
TU172681 lncRNA upstream 165696 20246651 ~ 20254434 (+) False AMCG00012512
TU172659 lncRNA upstream 182257 20170426 ~ 20237873 (+) True G137337
TU172660 lncRNA upstream 182257 20177081 ~ 20237873 (+) False G137337
TU172654 lncRNA upstream 192094 20165283 ~ 20228036 (+) True G137332
TU172869 lncRNA downstream 67208 20489764 ~ 20493787 (+) True AMCG00012523
TU172871 lncRNA downstream 111196 20533752 ~ 20533959 (+) True G137494
TU172927 lncRNA downstream 334474 20757030 ~ 20757264 (+) True G137539
TU172996 lncRNA downstream 579412 21001968 ~ 21039749 (+) False AMCG00012539
TU173083 lncRNA downstream 797643 21220199 ~ 21221044 (+) True G137634
AMCG00012519 mRNA upstream 34374 20372680 ~ 20385756 (+) True AMCG00012519
AMCG00012515 mRNA upstream 66851 20348607 ~ 20353279 (+) True AMCG00012515
AMCG00012516 mRNA upstream 75484 20341372 ~ 20344646 (+) False AMCG00012516
AMCG00012518 mRNA upstream 92844 20300826 ~ 20327286 (+) True AMCG00012518
AMCG00012517 mRNA upstream 128763 20283249 ~ 20291367 (+) True AMCG00012517
AMCG00012521 mRNA downstream 8439 20430995 ~ 20445287 (+) True AMCG00012521
AMCG00012523 mRNA downstream 58558 20481114 ~ 20493659 (+) False AMCG00012523
AMCG00012525 mRNA downstream 362063 20784619 ~ 20788119 (+) True AMCG00012525
AMCG00012532 mRNA downstream 396694 20819250 ~ 20829362 (+) True AMCG00012532
AMCG00012536 mRNA downstream 411315 20833871 ~ 20839466 (+) True AMCG00012536
TU172707 other upstream 78684 20331081 ~ 20341446 (+) True AMCG00012516
TU172571 other upstream 524531 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 604513 19814925 ~ 19815617 (+) True G137252
TU172360 other upstream 1181172 19237689 ~ 19238958 (+) True G137111
TU172324 other upstream 1245709 19169748 ~ 19174421 (+) True G137083
TU172848 other downstream 8369 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other downstream 8480 20431036 ~ 20440670 (+) False AMCG00012521
TU173010 other downstream 634139 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 791041 21213597 ~ 21219163 (+) True G137633
TU173085 other downstream 802185 21224741 ~ 21230836 (+) True G137636

Expression Profile