RNA id: TU172869


Basic Information

Item Value
RNA id TU172869
length 2458
lncRNA type sense_over
GC content 0.42
exon number 4
gene id AMCG00012523
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20481114 ~ 20493787 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACATGTTAAAATCCCACTACttggaatatacaaaacatGGGAAAGAGCTAACAAGGCTAAGTAGGGCTAATCAAGGCGAAGGAGAATACAAAGCCATGGAGTAGCGGCGACCTCTGTTGGTGATGTTAGGGAATTCTTGGGGATGTCACGGACGTACAGCACTGAACAGAGAGATGTCTACAATAGCAAAGACTGAGCTTTGTTTGATACTAAACATCACGGCTTTCAGCACCGGCTTGACAAACAACTATTATGTTTAAGAGCTACTGAACTTTACGTCTTTTTCTGATAGAATGCATGTAAAATAGTGCTTTcaagaaataaacagtttttacCACTTTACGCATTATTTTGGAAAACTTTCAGTTGAAGTTTTAAAAGTTAAGATGTTCTAGTATCCGAAAACACTGAAAACTCTATTGAGAACACGACTGGTTTTGTGGTGGAACgtcacatattttcttttactttttgtaatCATTGAATGTATCAATAATCAATTATCACTTTGCAGCAGCATTTACAACTAGTCAGCAGATTATTCATGTTGTCATTGATcctccctgctaacacacaatgttgccacaacgttgtagcaaccTAAATTACGTGTTAGCTGGGGTAACATTTTGTTGGCTAGTTATCTGCTTCCATCgtgttgatttcaaagctgATTCCGATTGAAAATTACTTCGATAATTAATAGCTGGCTTGTTGCATGGATTGAGGTCATACACACGCATCACTAGACACAACAGGTGAGGTGAATTACATAACGTCTGTAACATACTTCTACCTTGTGCCttcttgttttgtaaatatatatgtcataTTTTTGTGGCCTTTTGATATTCTGGGCCACTAGGCGACCGATAGTCCGCCTGTACCTTTGTCCGGCCCTGGTGACGTGAGGGGGGGGAAATGAAAACGGTAGAAGTATTTGTTTCATCCTCATTgccttctctgtgtgtgtgaatctgtGAGTTTTTCCCGCTTTGATTACAGTCAGATCGGATAATAAACTGGCTATATGACTGTATTGCTGCTACACCGTCCTGTATTCGTGGTCGCTGTGCTGTCGTCTATGCGTCAGCTTTTCTATCAAACATACCTGCTATTATTATACTACAGCTGCTATACTAACCTACTTACTTTTACATACTACCCCAGtacaaaatgattattattatgtttatttcttggcagacgcccttatccagggcgacataaCAACATACGTGCAatcaaagtgcaagaatacagttcagtacatcaaacattacaaattaaaatttacattatacaaagcaatttaaagtaaaatacattttacaacttccaatttacacaggcatgTACAGTAAGTGCGgccctacatcctggacagtaaaagctaagtgctgtcaagatgtaggtcacagtcaagggctacgggaaagggagcaagggtgaaaaatcaataatacaagtattagtaacgcaagaagcatgatagtAAAGTGCTAATCTAACCGGGATATGAAGGACtcatattacaagtactgtctgatgtgtcttgagtaagcgctggaatgagatcaaggactctgctgtttttactgttttgtgtttgacttcatttaggggtcagggatgagaaggagcgccTCTGGAGGAAGGATAGTGGAGAGGAGTCACAGTCATACTACTTCGACATTTTTTAACTGTAGTACCTTGAAAATATGTCATATCCAGCAGCATATCATACCAAAAGTACTGCGACATGCAGAAACGgtatcttcagatactttaaagTCTTGTTTGTAGTATAACTGCATTTATAGAATATTGAGGCGACTAATACTATGCACTGCCCCACGTTTGGCGATAAATGTACAGTACGTCACGTTTAGAGTTGATCTTTTCAATGACTTGATCTTTTCCACACACATACCAAACAATCCAGTCAGAtctgcgcaggcgcacaggcaGCACTCAGACCCGCGTCGCCGCCATCACCTCCAAGGTTTCCACGTTGGCATGGTAACAGTTGTCACTCGCAGCCGCCGCACTCACAGCCATGGCGCAGAGCAGCGGCCTAGAGCGGCCTGACATCGGCGCCCTGAACCCCGAGCAACAGGAGAGACTGCGGCAGTTCAAGataaaaacaagaatCGCTAATGAGACATATGTAAGATCTCACCCAGAGGTCGAGCTACTTCTGAGTGAGTTTTTAAGAGAAGTTTTCTTGAAGAGACCAGTGGACATTCGAGAATTTGCTGCAGATCATTTCACTGACCCGGACTTGCCGGACAGAGTGCGCGTGAAACTGGAGAAGGCTTCAGAGTGACTGCAGCCGTCAAACTTGTATTAAACCTAAATTGCACAAAATCAGTGTCTTGTACTGAtcctttccctgtgtgtctaaTGGGTCATGGACGCCAGCCCTGGTATAGTAgggtgtagtgtagtataggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172823 lncRNA upstream 67208 20420130 ~ 20422556 (+) False AMCG00012522
TU172701 lncRNA upstream 160940 20321606 ~ 20328824 (+) True G137364
TU172681 lncRNA upstream 235330 20246651 ~ 20254434 (+) False AMCG00012512
TU172659 lncRNA upstream 251891 20170426 ~ 20237873 (+) True G137337
TU172871 lncRNA downstream 39965 20533752 ~ 20533959 (+) True G137494
TU172927 lncRNA downstream 263243 20757030 ~ 20757264 (+) True G137539
TU172996 lncRNA downstream 508181 21001968 ~ 21039749 (+) False AMCG00012539
TU173083 lncRNA downstream 726412 21220199 ~ 21221044 (+) True G137634
TU173078 lncRNA downstream 738193 21231980 ~ 21267912 (+) True G137631
AMCG00012521 mRNA upstream 44477 20430995 ~ 20445287 (+) True AMCG00012521
AMCG00012522 mRNA upstream 68132 20401009 ~ 20421632 (+) True AMCG00012522
AMCG00012519 mRNA upstream 104008 20372680 ~ 20385756 (+) True AMCG00012519
AMCG00012515 mRNA upstream 136485 20348607 ~ 20353279 (+) True AMCG00012515
AMCG00012516 mRNA upstream 145118 20341372 ~ 20344646 (+) False AMCG00012516
AMCG00012525 mRNA downstream 290832 20784619 ~ 20788119 (+) True AMCG00012525
AMCG00012532 mRNA downstream 325463 20819250 ~ 20829362 (+) True AMCG00012532
AMCG00012536 mRNA downstream 340084 20833871 ~ 20839466 (+) True AMCG00012536
AMCG00012530 mRNA downstream 350017 20843804 ~ 20847235 (+) True AMCG00012530
AMCG00012534 mRNA downstream 412269 20906056 ~ 20916631 (+) True AMCG00012534
TU172848 other upstream 49094 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other upstream 49094 20431036 ~ 20440670 (+) False AMCG00012521
TU172707 other upstream 148318 20331081 ~ 20341446 (+) True AMCG00012516
TU172571 other upstream 594165 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 674147 19814925 ~ 19815617 (+) True G137252
TU173010 other downstream 562908 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 719810 21213597 ~ 21219163 (+) True G137633
TU173085 other downstream 730954 21224741 ~ 21230836 (+) True G137636
TU173067 other downstream 776573 21270360 ~ 21332070 (+) False G137629
TU173071 other downstream 776573 21270360 ~ 21276736 (+) True G137629

Expression Profile