RNA id: AMCG00012527


Basic Information

Item Value
RNA id AMCG00012527
length 489
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00012527
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20859265 ~ 20862618 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTTCTATACAGTTTCAGCAGCTGGAGATCACTGAGGAGAGACCACAGGTAAGTGTGTGGGTAGCTGAAGCCCTGCAGTGTGAGGCTGTCCCTGGTGTCCTGGAGCAGATTGACACTGGTGCTGGCAGAGTGTGTGGCATCCATAATGAGAGCAAAGTCATGGACATCCGTGATGACCGTTGGGTTGATCTAAAGGCATCTGGTAAATGTGTCGGTGTAGGACCTGCTGGGCTCTGGGGTGTGGGCCTTGATGGCCTGGCCTTCAAGTGGTTTAGAAGTGGCTGGGTCCAGGTGAATCCAGGCAACCTGAACCAGATTGATGCTGGTGGGGACAAGTTTGTGGTGGGCTGCAATCCCTCCAGTGGCATTGTCTGTCTGAACCACAGGCCTGCACTGAGCTACAATGGCTCTGGCAGTGCATCCTGCATGGCAGTCCCAGGCGAGATCAAGTACTACTCCTGTGGGCCTGTTGGGTGCTGGGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172957 lncRNA downstream 29898 20819325 ~ 20829367 (-) True G137558
TU172899 lncRNA downstream 281422 20569818 ~ 20577843 (-) True G137517
TU172901 lncRNA downstream 307120 20542765 ~ 20552145 (-) True G137518
TU172872 lncRNA downstream 322071 20536948 ~ 20537194 (-) True G137495
TU172844 lncRNA downstream 435585 20423387 ~ 20423680 (-) True G137472
TU173023 lncRNA upstream 89320 20951938 ~ 20956378 (-) True G137591
TU173039 lncRNA upstream 167474 21030092 ~ 21093996 (-) True G137605
TU173034 lncRNA upstream 171912 21034530 ~ 21039767 (-) True G137601
TU173054 lncRNA upstream 234304 21096922 ~ 21097296 (-) True G137619
TU173063 lncRNA upstream 303840 21166458 ~ 21169358 (-) True G137628
AMCG00012528 mRNA downstream 62 20858725 ~ 20859203 (-) True AMCG00012528
AMCG00012526 mRNA downstream 24773 20832941 ~ 20834492 (-) True AMCG00012526
AMCG00012524 mRNA downstream 116267 20703429 ~ 20742998 (-) True AMCG00012524
AMCG00012520 mRNA downstream 562204 20292730 ~ 20297061 (-) True AMCG00012520
AMCG00012507 mRNA downstream 680301 20168155 ~ 20178964 (-) True AMCG00012507
AMCG00012537 mRNA upstream 39106 20901724 ~ 20905761 (-) True AMCG00012537
AMCG00012541 mRNA upstream 177500 21040118 ~ 21042443 (-) False AMCG00012541
AMCG00012545 mRNA upstream 257498 21120116 ~ 21121378 (-) True AMCG00012545
AMCG00012548 mRNA upstream 325559 21188177 ~ 21212016 (-) True AMCG00012548
AMCG00012547 mRNA upstream 362123 21224741 ~ 21230841 (-) True AMCG00012547
TU172771 other downstream 588401 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 948887 19904422 ~ 19910378 (-) False AMCG00012503
TU172548 other downstream 1065734 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 1065734 19744335 ~ 19793531 (-) False G137246
TU172487 other downstream 1351871 19441927 ~ 19507394 (-) True G137199
TU173042 other upstream 172545 21035163 ~ 21038431 (-) True G137608
TU173044 other upstream 177471 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 571046 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 634061 21496679 ~ 21502199 (-) True AMCG00012556
TU173345 other upstream 1215555 22078173 ~ 22088469 (-) True AMCG00012564

Expression Profile