RNA id: AMCG00012532


Basic Information

Item Value
RNA id AMCG00012532
length 1416
RNA type mRNA
GC content 0.56
exon number 9
gene id AMCG00012532
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20819250 ~ 20829362 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCACGACAACTCTTTGGACTTTGAAAATATCATAGCTGTGGCAGAAAGAGGTCAAGGGCCAGCCAACAATGTTTTGCTCACGCTAGCCAATCCTGACAGGCTGGGAAGCCCCATTGTGGGCAGCCTATCAGTGTACTCCACCCAATCCTCAGCCATGAAGTTCTCCCTGTTCGCCGCCTTTGTTGTCGTATTGGCTCTGACACATGGCAGTGATGCCTCCTACCTGAGGGATGAGCCCGCCAAGACAGACCTGGAAACTCTGACCAAGTACTTCCAGGATCTGTCTGCCCTGATTTCCAGCACCACCCAGGATATTGTGGACAAACCCCTGGCTGACAACCTCCAGGCCCAACTAAAGCCCCTCGTGGACAACCTGGAGGAGCAGCTCAAACCCATGGCTGACAACCTGCAGGCCCAGGTGAAGCCCGTGACAGACAACCTGCAGGCCCAGCTCGTTGACTTCTGGCAGAAGATCCTGGACCAGGCCAAGGCTCTGGCTCCCCCCCAAGCAGTGGTGCCACTTGCCATGTCATCTACCCTGGCCAATGTGTGGGTAGCTGAAGCCCTGCAGTGTGAGGCTGTCCCTGGTGTCCTGAAGCAGATTGATGCTGGTGCTGGCAGAGTGTGTGGCATCTTGAAAGAGGGCAAAGTCGTGGAGTTCCGTGATGGCCATTGGGTTGAGCTAGAGGCATCTGGTAAACATGTCAGTGTAGGGCCTGCTGGGCTCTGGAGGGTGGGTGTTGATGGCCTGGTCTTCAAGTGGTTTAGAAGCGGCTGGGTCCAGGTGAATCCAGGCAACCTGATCCAGATTGATGCTGGTGGGGACAAGTTTGTGGTGGGCTGCAATGCCTCCCACAGTATCTTCTGTCTGAACCACAGGCCTGCACTGAGCTATGATGGTACTGGCAGTGTGTCCTGGATGGCAGTCCCAGGCAAGCTCAAGTACTACTCCTGTGGGCCTGTTGGGTGCTGGGGAGTGAACCAGCTAGATGAAATCCACGTCAAGCTGGGTGTCAGTGGGAATTCCTGTCATGGCCCTGAGAAGTGGTACCGCATTCCAGGCTCCCTGTCCATGGTGGAAGTGAGTGTGGATGGTGAAGTGCATGGAGTGAACAAACATGGCTGGGTATACAAAAGGATTGGTGTCAGTGCCTGTAACCCCTTTGGCAGTGGGTGGGAACATCTAAGGGTAGCTGGACTAAGCAGCCATGTGTCGTATGATCGTGGAGCCCTGTGGATTATCTGCAGAAATGGTGACCTCCTGGCTGACAACCAACAGGCCCAACTGAAGCCGCTGGTGGACAACCTGGAGCAGCAGCTCAATCCCACGACGGACAACCTGCAGGCCCAGGTGAAGCCCGTGGCAGACAACCTGCAGGCCCAACTCGTTGACTTCTGGCAGAAGATCCTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172927 lncRNA upstream 61986 20757030 ~ 20757264 (+) True G137539
TU172871 lncRNA upstream 285291 20533752 ~ 20533959 (+) True G137494
TU172869 lncRNA upstream 325463 20489764 ~ 20493787 (+) True AMCG00012523
TU172823 lncRNA upstream 396694 20420130 ~ 20422556 (+) False AMCG00012522
TU172701 lncRNA upstream 490426 20321606 ~ 20328824 (+) True G137364
TU172996 lncRNA downstream 172606 21001968 ~ 21039749 (+) False AMCG00012539
TU173083 lncRNA downstream 390837 21220199 ~ 21221044 (+) True G137634
TU173078 lncRNA downstream 402618 21231980 ~ 21267912 (+) True G137631
TU173094 lncRNA downstream 416301 21245663 ~ 21252995 (+) False AMCG00012546
TU173073 lncRNA downstream 440998 21270360 ~ 21332070 (+) False G137629
AMCG00012525 mRNA upstream 31131 20784619 ~ 20788119 (+) True AMCG00012525
AMCG00012523 mRNA upstream 325591 20481114 ~ 20493659 (+) False AMCG00012523
AMCG00012521 mRNA upstream 373963 20430995 ~ 20445287 (+) True AMCG00012521
AMCG00012522 mRNA upstream 397618 20401009 ~ 20421632 (+) True AMCG00012522
AMCG00012519 mRNA upstream 433494 20372680 ~ 20385756 (+) True AMCG00012519
AMCG00012536 mRNA downstream 4509 20833871 ~ 20839466 (+) True AMCG00012536
AMCG00012530 mRNA downstream 14442 20843804 ~ 20847235 (+) True AMCG00012530
AMCG00012534 mRNA downstream 76694 20906056 ~ 20916631 (+) True AMCG00012534
AMCG00012531 mRNA downstream 90345 20919707 ~ 20921908 (+) True AMCG00012531
AMCG00012535 mRNA downstream 95104 20924466 ~ 20930384 (+) True AMCG00012535
TU172848 other upstream 378580 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other upstream 378580 20431036 ~ 20440670 (+) False AMCG00012521
TU172707 other upstream 477804 20331081 ~ 20341446 (+) True AMCG00012516
TU172571 other upstream 923651 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 1003633 19814925 ~ 19815617 (+) True G137252
TU173010 other downstream 227333 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 384235 21213597 ~ 21219163 (+) True G137633
TU173085 other downstream 395379 21224741 ~ 21230836 (+) True G137636
TU173067 other downstream 440998 21270360 ~ 21332070 (+) False G137629
TU173071 other downstream 440998 21270360 ~ 21276736 (+) True G137629

Expression Profile