RNA id: AMCG00012533


Basic Information

Item Value
RNA id AMCG00012533
length 799
RNA type mRNA
GC content 0.58
exon number 7
gene id AMCG00012533
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20951848 ~ 20956923 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCCTCAAAAAAACGCAAGACCTCCAGCATCCCAGCGTCCAGTGCGCTATAAACAACAGTCGCAGATACGCgctgagacacaaacacaacgCGGACAAGATGGCGGACGTGCTGGACCTACACGAAGCGGGGGGCGAGGATTTTCCTATGGATGAGGATGAAAGCATCCACAAGCTGAAGGAGAAGGCGAAGAGGCGGAAAGGACGAGGCTTTGGATCCGAGGAAGGTGCGCGCTCCAGGGTGCGGGAGGACTATGACACAGTAGAGCAGGATGGGGACGAGCCAGGCCCACAGAGATCGGTGGAGGGCTGGATCCTGTTTGTCACGGGCGTGCACGAGGAAGCCACCGAAGAGGACATCCACGACAAGTTTGCAGAGTTCGGAGAAATCAAGAATCTGCATCTGAACTTGGACCGGAGGACAGGCTACCTGAAGGGTTATGCGCTGGTAGAGTACGAGACCTACAAAGAGGCCCAGGCTGCTATGGAAGGGTTAAACGGTCAAGATCTCATGGGTCAGCCAATCAGTGTGGACTGGGGCTTCGGGTGGGAGGAGACGGAGCAGGAGCCCAGACAGGAGGCGCCGCTGAGCCCCACAGTGCAGAGAACCAAGCTGCGGACTGGGGCTTCCGGATGGAAGACGGCAGAAGGCACGTTCCCCGCTCAACAGTGCGGTTTCCCGGTCCGCTTGAACTACCAGGACAAGTGTTCCCGGCTGCTGGTGCTATCTGTGCCGTTTGCCAGGAAACCCTTTAACGGCAGGCTGATCCTTACAGACGCCACGGGGGGATTGGGTTGA

Function

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006417 regulation of translation biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0051028 mRNA transport biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12876 RBM8A, Y14; RNA-binding protein 8A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172927 lncRNA upstream 194584 20757030 ~ 20757264 (+) True G137539
TU172871 lncRNA upstream 417889 20533752 ~ 20533959 (+) True G137494
TU172869 lncRNA upstream 458061 20489764 ~ 20493787 (+) True AMCG00012523
TU172823 lncRNA upstream 529292 20420130 ~ 20422556 (+) False AMCG00012522
TU172701 lncRNA upstream 623024 20321606 ~ 20328824 (+) True G137364
TU172996 lncRNA downstream 45045 21001968 ~ 21039749 (+) False AMCG00012539
TU173083 lncRNA downstream 263276 21220199 ~ 21221044 (+) True G137634
TU173078 lncRNA downstream 275057 21231980 ~ 21267912 (+) True G137631
TU173094 lncRNA downstream 288740 21245663 ~ 21252995 (+) False AMCG00012546
TU173073 lncRNA downstream 313437 21270360 ~ 21332070 (+) False G137629
AMCG00012529 mRNA upstream 1394 20940980 ~ 20950454 (+) True AMCG00012529
AMCG00012535 mRNA upstream 21464 20924466 ~ 20930384 (+) True AMCG00012535
AMCG00012531 mRNA upstream 29940 20919707 ~ 20921908 (+) True AMCG00012531
AMCG00012534 mRNA upstream 35217 20906056 ~ 20916631 (+) True AMCG00012534
AMCG00012530 mRNA upstream 104613 20843804 ~ 20847235 (+) True AMCG00012530
AMCG00012539 mRNA downstream 35567 20992490 ~ 21004190 (+) True AMCG00012539
AMCG00012540 mRNA downstream 56498 21013421 ~ 21038429 (+) True AMCG00012540
AMCG00012538 mRNA downstream 87326 21044249 ~ 21050805 (+) True AMCG00012538
AMCG00012544 mRNA downstream 148196 21105119 ~ 21109248 (+) True AMCG00012544
AMCG00012543 mRNA downstream 152615 21109538 ~ 21112947 (+) True AMCG00012543
TU172848 other upstream 511178 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other upstream 511178 20431036 ~ 20440670 (+) False AMCG00012521
TU172707 other upstream 610402 20331081 ~ 20341446 (+) True AMCG00012516
TU172571 other upstream 1056249 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 1136231 19814925 ~ 19815617 (+) True G137252
TU173010 other downstream 99772 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 256674 21213597 ~ 21219163 (+) True G137633
TU173085 other downstream 267818 21224741 ~ 21230836 (+) True G137636
TU173067 other downstream 313437 21270360 ~ 21332070 (+) False G137629
TU173071 other downstream 313437 21270360 ~ 21276736 (+) True G137629

Expression Profile