RNA id: AMCG00012537


Basic Information

Item Value
RNA id AMCG00012537
length 870
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00012537
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20901724 ~ 20905761 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGTGGCATGAAGAGAGATTGCCACTTATGCACGAGGCAAGAAGGAAGCTGATTGTTCTGCAGGACTTCAATGCAGGCAATTTCAACATCAAATACAGCTCACTGGACATTGGTGATGAGTTTAAGGTGGAAAACATCAATGCTAAGTACAAGGGCCACTTGTGCCTGGTGTTCGAGATGCTGGATCAGAACCTGTACGATGTCCTCAGCTTCGGGCCCCTGCCCTTCAAGCACATCAGGCCCATCCTGCAGCAGGTCGCTTCTGCCCTGATGAAGCTGGAGAGTTTGGGGATGATCTACACCGACCTCAAGCCCGACAACATTATGCTGGTGGACTCGGCCAGGCAGCCCCTCCGAGTCAAGCTGATCAACTTCGGCCTGGCCATCCATGTCTCGGAGGCAGTGTGCTCTGACTGCGTGCAGGCCACATATTTCAGGGCTCCAGAGATCATCCTTGGCCTACCCTACAATCAAGCCATCGATATGTGGTCGCTGGGATTCATCATTGCGGAGCTGTTTCTGGGGTGGCCTCTGTTCCCCGAGGCATCGGTGTATGATCACATCCGCTACATTGTTGAGATGCAGGGTTTGCCGGCGGAGAACCTGCTAAGTGCCGGGACAAAGGCAGGAGAGTTCTTTAATAGAGACTCAGCCAACTCTCTGTGGAGAATGAAGACGCCAGAGGAGCATGAGAGAGAAATGGGAATCCAGTCAAAGGAGCAGCGGCTGTACATGTCCAGTGGTTTTGATGACATGGTGTTGCTCCATATGCAAATGTCTGGAAGGGAATTACTTGTTGGCAGAATTGATAGACTGACTGCAGTTCATCGACCTGCTGAAGAGGATGCTGGAAATGGACCCAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172957 lncRNA downstream 72357 20819325 ~ 20829367 (-) True G137558
TU172899 lncRNA downstream 323881 20569818 ~ 20577843 (-) True G137517
TU172901 lncRNA downstream 349579 20542765 ~ 20552145 (-) True G137518
TU172872 lncRNA downstream 364530 20536948 ~ 20537194 (-) True G137495
TU172844 lncRNA downstream 478044 20423387 ~ 20423680 (-) True G137472
TU173023 lncRNA upstream 46177 20951938 ~ 20956378 (-) True G137591
TU173039 lncRNA upstream 124331 21030092 ~ 21093996 (-) True G137605
TU173034 lncRNA upstream 128769 21034530 ~ 21039767 (-) True G137601
TU173054 lncRNA upstream 191161 21096922 ~ 21097296 (-) True G137619
TU173063 lncRNA upstream 260697 21166458 ~ 21169358 (-) True G137628
AMCG00012527 mRNA downstream 39106 20859265 ~ 20862618 (-) True AMCG00012527
AMCG00012528 mRNA downstream 42521 20858725 ~ 20859203 (-) True AMCG00012528
AMCG00012526 mRNA downstream 67232 20832941 ~ 20834492 (-) True AMCG00012526
AMCG00012524 mRNA downstream 158726 20703429 ~ 20742998 (-) True AMCG00012524
AMCG00012520 mRNA downstream 604663 20292730 ~ 20297061 (-) True AMCG00012520
AMCG00012541 mRNA upstream 134357 21040118 ~ 21042443 (-) False AMCG00012541
AMCG00012545 mRNA upstream 214355 21120116 ~ 21121378 (-) True AMCG00012545
AMCG00012548 mRNA upstream 282416 21188177 ~ 21212016 (-) True AMCG00012548
AMCG00012547 mRNA upstream 318980 21224741 ~ 21230841 (-) True AMCG00012547
AMCG00012552 mRNA upstream 363979 21269740 ~ 21274408 (-) True AMCG00012552
TU172771 other downstream 630860 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 991346 19904422 ~ 19910378 (-) False AMCG00012503
TU172548 other downstream 1108193 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 1108193 19744335 ~ 19793531 (-) False G137246
TU172487 other downstream 1394330 19441927 ~ 19507394 (-) True G137199
TU173042 other upstream 129402 21035163 ~ 21038431 (-) True G137608
TU173044 other upstream 134328 21040089 ~ 21042443 (-) True AMCG00012541
TU173202 other upstream 527903 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 590918 21496679 ~ 21502199 (-) True AMCG00012556
TU173345 other upstream 1172412 22078173 ~ 22088469 (-) True AMCG00012564

Expression Profile