RNA id: AMCG00012538


Basic Information

Item Value
RNA id AMCG00012538
length 1556
RNA type mRNA
GC content 0.64
exon number 6
gene id AMCG00012538
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21044249 ~ 21050805 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGCGTGGCTGAGGCGGGGCGGGAAGGCCACTTCCGTCGGACGCGGCGAGCACGCAGGATTCAACATGGCGGCGGGACCGATCTCAGAGAGAAATCAAGATGCCACTGTGTATGTGGGGGGTCTCGACGAGAAGGTGTCCGAGCCCTTGCTGTGGGAGCTGTTTCTCCAGGCGGGGCCAGTAGTCAACACGCACATGCCCAAAGACAGAGTGACCGGGCAGCACCAAGGATATGGCTTCGTGGAGTTCCTGAGCGAGGAGGACGCTGACTACGCCATCAAGATCATGAACATGATCAAGCTGTACGGCAAGCCCATCCGTGTCAACAAAGCCTCGGCCCACAACAAGAACTTGGATGTGGGCGCCAACATCTTCATCGGCAACCTAGACCCCGAGATCGATGAGAAGCTCCTCTACGACACCTTCAGTGCCTTCGGGGTGATCCTGCAAACGCCCAAGATCATGCGCGACCCCGACACGGGCAACTCCAAAGGCTACGCCTTCATCAACTTCGCCAGCTTCGATGCCTCGGATGCCGCCATTGAGGCCATGAACGGCCAGTACCTCTGCAACCGGCCCATCACCGTCTCCTACGCCTTCAAGAAAGACTCCAAGGGCGAGCGGCATGGCTCGGCCGCTGAGCGCCTCCTGGCCGCCCAGAACCCCCTGTCCCAGGCTGACCGCCCCCATCAGCTCTTTGCCGACGCGCCCCCTCCACCCTCGGCCCCCACCCCCGTCCTCACCTCCATGGGACATGGGGTCCACCACCCGGGCCTGTACCAGAAAGgGATTCCCCCTCCTGGCAGCTACCCTCCGCCCGTGCCCCCCCCTGGCTCCATGCCCCCTGGGATGCCCCCTGGCATGCCGCCTCCACCAATGCCCCCTGGTTCAGGAAACCCAGGACAGGGTGGAGGAGCTCCAGGATCGGGACCCCCGCCCGGACCCCCGCCCTTCCCTCCCGGAGGCATGCCCCCAGGCATGCCCCAGATGCCCATGCCCCCTCCTGGCCCGCCCGGCATGGTGCCTCCGCCCCCGGGTTCAGGAGGCCAGGGACACCCGCATCCACCCCCACCTCCTGGCATGCCCCACCACGGACATCCCCACATGGGCATGCACCGCTTCGGTCCGCCGATGGgACACCCAGGGCAGATGCACCCCCCAGGGATGAGGGGACCCCCACCTCCCATGCCCCCTCCAGGCTACGGCGGCGGCCCACCCCGTCCCCCTCCCTTCGGCTTCCAGCGGGGGCTCCCCATGCCTCCCAGGCCCAACAACAGACCCCCTGTCCCGCCCCGGGGCCCCATGAGACCCATGCCCCCCTAGACCACAGACTGCACCCCCGGCCCCACCTAATCTTGGGGACAATCTCCCCGCCTCTGGCCCGTTTGTCTtgcttctgtgtttttattttattttctctagtCCACCGCGAGTTTGAGACTCACAAGAAAGCGTCCgtttttgttctgtgttgtcTCACTCTGAGGTTCCCCCCCGGGCCCCCTCGTCCCTTTGCTTTTGTACAGATCTCTTGTGAGTCGAGAAATAAAGCTTTT

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12831 SF3B4, SAP49; splicing factor 3B subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172996 lncRNA upstream 4500 21001968 ~ 21039749 (+) False AMCG00012539
TU172927 lncRNA upstream 286985 20757030 ~ 20757264 (+) True G137539
TU172871 lncRNA upstream 510290 20533752 ~ 20533959 (+) True G137494
TU172869 lncRNA upstream 550462 20489764 ~ 20493787 (+) True AMCG00012523
TU172823 lncRNA upstream 621693 20420130 ~ 20422556 (+) False AMCG00012522
TU173083 lncRNA downstream 169394 21220199 ~ 21221044 (+) True G137634
TU173078 lncRNA downstream 181175 21231980 ~ 21267912 (+) True G137631
TU173094 lncRNA downstream 194858 21245663 ~ 21252995 (+) False AMCG00012546
TU173073 lncRNA downstream 219555 21270360 ~ 21332070 (+) False G137629
TU173107 lncRNA downstream 257413 21308218 ~ 21309033 (+) True G137645
AMCG00012540 mRNA upstream 5820 21013421 ~ 21038429 (+) True AMCG00012540
AMCG00012539 mRNA upstream 40059 20992490 ~ 21004190 (+) True AMCG00012539
AMCG00012533 mRNA upstream 87326 20951848 ~ 20956923 (+) True AMCG00012533
AMCG00012529 mRNA upstream 93795 20940980 ~ 20950454 (+) True AMCG00012529
AMCG00012535 mRNA upstream 113865 20924466 ~ 20930384 (+) True AMCG00012535
AMCG00012544 mRNA downstream 54314 21105119 ~ 21109248 (+) True AMCG00012544
AMCG00012543 mRNA downstream 58733 21109538 ~ 21112947 (+) True AMCG00012543
AMCG00012542 mRNA downstream 97433 21148238 ~ 21166777 (+) True AMCG00012542
AMCG00012546 mRNA downstream 195102 21245907 ~ 21253003 (+) True AMCG00012546
AMCG00012549 mRNA downstream 249259 21300064 ~ 21307188 (+) True AMCG00012549
TU172848 other upstream 603579 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other upstream 603579 20431036 ~ 20440670 (+) False AMCG00012521
TU172707 other upstream 702803 20331081 ~ 20341446 (+) True AMCG00012516
TU172571 other upstream 1148650 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 1228632 19814925 ~ 19815617 (+) True G137252
TU173010 other downstream 5890 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 162792 21213597 ~ 21219163 (+) True G137633
TU173085 other downstream 173936 21224741 ~ 21230836 (+) True G137636
TU173067 other downstream 219555 21270360 ~ 21332070 (+) False G137629
TU173071 other downstream 219555 21270360 ~ 21276736 (+) True G137629

Expression Profile