RNA id: TU172996


Basic Information

Item Value
RNA id TU172996
length 2539
lncRNA type read_through
GC content 0.43
exon number 2
gene id AMCG00012539
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20992490 ~ 21039749 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCAACTACTGCTCGTACTGCTACCGAGAGGAGCTCAGACGAAGGGAAGCGGAGCCGGCCGTACACAGGTTCTGAAGCCACGCCcacatctccctctctctctctctctctctctcacacccgTTCTCGACTAGGGAGGTATTTATACAAGCCCTCGCCACTGCCCTGCCCTCTTTCCAGATCCAGTACTGACAAACCAGAAAGAGAattgcccctctctctccatgccTGTTACTGGAAATGCAATAAGAATCGAAAAGCGATAGTAATAATCCAATTCATTCTATTAAGACTCATTAATGTCTTATCAATCAGGCCATGAGGGACACATGGAGAGGGGGTTTCCCGGTGAATTATGGAAGATGGGAAAGGAGgtcattttgtttggtttttttgtccattttatttctctgttctAAGTCCACCTAGTTTCAAGTGGTTTCATGTTTGCTTGCTGATTTTCTTGCGCAGGTTTGTTTAAGTCAAACCCCTCCAGACCTTCATCACTCCTGTTCTCCAGCCCCTGGTGCCGTTTTCAGGGGTCGGGTGTGAACTGCCATATGTTCTTTGTATATCCACAGCCCTActgcttttaaataacaaaGTGTCTATCATTTCTTATCAACAAGCCCAGCTGGTCTCTTGAAAAGCCCCCTGTCCCAGAGCACCACCCAGTGGAGAGCATTTGTATGTGCAAGTAATACTCACAGAGCAGTATCTAATAGTCTtgcgcaaaaaaaaaaagttaacgaCCCCACGATGCACGAAAAGCTACCAAGAAACAGGTAGAAACGGCTCGGAAAATGAAAGCAGGCGAGATATTCCTGTTTGAGTAATGTCCTCAGATATTGGTGAACTTCATTTGTCAAGAGGGAACCTACTCCAGGCCTAATAATAGACACAAAACTATGAAAAATCTGCGTATTTTGTAACGGGGAAACCTTCGAATGGCACCCTGTGGTACAGAGAGTGCAATGCGTCTGGACTACTATGCAATCCCTAAGCCTCCTGGGGCGAGAGAGACCTCTTTGCCTTCTAACATGCACCTGTTGAGGGCATTGTCCAGTGATCAGCAGCACAGTTCCAGTGGTGGTCCTGTTAGAGTTGATTGACATGTGATTGTGATTGAGCTGTCTCCGGTGGGGTTGGTGGGGCTGGTTTTGAAGTGGACTGCTAGGGCTTTAGTCATATAACTTGCTGTAACAAGGTTTAACACAGGTTTTCTCCCGAatgaggattaaaaaaaattaatgaaacttcagtgttttattattatggaGGCTTATCCGATAAGCACTGCACAGCATGAGAATTTCTATAgcagtacagagagagaaatcagtCCCTGTAATTGCTGTCTGCGATTCCAGTTCCTCCCAGTGGTGCTCTCTTTACATGATGGAGGTGGGGACTCTGATTAGGGTGATTCATGTTTATAAGGCCGAGTGGTCCACTCATTGTAAAGCTGagagatgtaaataataataataataataatataaaaaatgtatcacaGGCCTAATGACATTGTATCacagagtaacacacacacagtgcagggtGCAGATTCAGTGCACTTGATCAGCCAACAGAGTGAAATCGCAGACAATCACAAGAGAGAGTTTAGACGTCCGTAAGTCACACGTTCCAGCACAGCAGGGACCCCTCTGATAAAGGAAGCGCTCCTGGATTGCTCATGGCTCTGCTTCCACCCCCCACAGCAGCTCATTCTCAATAACAGACGAGTGAATCTGTGCCGCACTTTCTTTCAGTTCACAAGTGTGCAGCTCGAAGGGAAGGTCTGTCCACTTCTCGCATCCGAAGCTTGCCAGCCCTCTCTGCTAGCGCTGGCATTCCCCAACGTATTGCAGTTCACCCCCGATCCCCAAGCACCAAGCTGCACACACGGCTCAAATGTAGCTATGGGCCTGTGTGGGAAATATTATTCATGGCAAAATGTGTCTACCTGCTGCTTCTTCACTGAAGAACGACTGGATTGCCAAATAGCTCCTGGAAATGAACCACGGCTTTGGTTAGAATTCAAATCATGTCCCGTTTgtttcattaatgtttttttttctttgtaattattattattgttattaatttattttgtacttctaAAACAAGTTGTGAAGTATTGGGCTTCAAACAGTGACAGATGGTCAGACATTGTGTGCACACtttctcttttgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatataatttcaagaaTGTGTACATACCCGATtctcttgttttaaatgttgctttgCCTTCTTAACACACTTTTCAGAGAACAAATAACCAAGGAGAGAGTCAGCTCCTTTATACTCTTCCCAGTTTGGTTAATGATGTGCTGTTTCCATGTATTGACTGCATACGTCAACATTATTGCATATTGACATTGGTTAGATTGGTCCAAATACCAGTATATTCCACAGCTGTTTCCAagttgtacatatatatatatttttttttgatGTCTTATTTAATGATGAAGGGGGAAGAAATAAATCCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU172927 lncRNA upstream 244704 20757030 ~ 20757264 (+) True G137539
TU172871 lncRNA upstream 468009 20533752 ~ 20533959 (+) True G137494
TU172869 lncRNA upstream 508181 20489764 ~ 20493787 (+) True AMCG00012523
TU172823 lncRNA upstream 579412 20420130 ~ 20422556 (+) False AMCG00012522
TU172701 lncRNA upstream 673144 20321606 ~ 20328824 (+) True G137364
TU173083 lncRNA downstream 180450 21220199 ~ 21221044 (+) True G137634
TU173078 lncRNA downstream 192231 21231980 ~ 21267912 (+) True G137631
TU173094 lncRNA downstream 205914 21245663 ~ 21252995 (+) False AMCG00012546
TU173073 lncRNA downstream 230611 21270360 ~ 21332070 (+) False G137629
TU173107 lncRNA downstream 268469 21308218 ~ 21309033 (+) True G137645
AMCG00012533 mRNA upstream 45045 20951848 ~ 20956923 (+) True AMCG00012533
AMCG00012529 mRNA upstream 51514 20940980 ~ 20950454 (+) True AMCG00012529
AMCG00012535 mRNA upstream 71584 20924466 ~ 20930384 (+) True AMCG00012535
AMCG00012531 mRNA upstream 80060 20919707 ~ 20921908 (+) True AMCG00012531
AMCG00012534 mRNA upstream 85337 20906056 ~ 20916631 (+) True AMCG00012534
AMCG00012538 mRNA downstream 4500 21044249 ~ 21050805 (+) True AMCG00012538
AMCG00012544 mRNA downstream 65370 21105119 ~ 21109248 (+) True AMCG00012544
AMCG00012543 mRNA downstream 69789 21109538 ~ 21112947 (+) True AMCG00012543
AMCG00012542 mRNA downstream 108489 21148238 ~ 21166777 (+) True AMCG00012542
AMCG00012546 mRNA downstream 206158 21245907 ~ 21253003 (+) True AMCG00012546
TU172848 other upstream 561298 20430925 ~ 20440670 (+) False AMCG00012521
TU172849 other upstream 561298 20431036 ~ 20440670 (+) False AMCG00012521
TU172707 other upstream 660522 20331081 ~ 20341446 (+) True AMCG00012516
TU172571 other upstream 1106369 19891167 ~ 19895599 (+) False G137265
TU172558 other upstream 1186351 19814925 ~ 19815617 (+) True G137252
TU173010 other downstream 16946 21056695 ~ 21059263 (+) True G137583
TU173082 other downstream 173848 21213597 ~ 21219163 (+) True G137633
TU173085 other downstream 184992 21224741 ~ 21230836 (+) True G137636
TU173067 other downstream 230611 21270360 ~ 21332070 (+) False G137629
TU173071 other downstream 230611 21270360 ~ 21276736 (+) True G137629

Expression Profile