RNA id: TU173044


Basic Information

Item Value
RNA id TU173044
length 1428
RNA type TUCP
GC content 0.48
exon number 2
gene id AMCG00012541
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21040089 ~ 21042443 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGCCCAAAACGACGCCCACTGGATTGACGTTGTGAAGAAGTGACTTTTGTCTAGACTAGACGGGACGGGTGTAGCAGGAGTCGGGCGGTAAATCATCAGTTGCAATTCCCTCGCATGGGACAGTTGCGTTCTTACATTTCTCCACGGACTACACAGCGTTTGAAAAGGGGATGTAGGTGTGAATGGGGGGCTGTCCGCCGGTTTCAGTTTCTGTATAAAACGTGTTGCTCCCCTCGCATTGAAGGATGTGCGCCCAGCCTCTCTCCACTCTAGCAGACCTGTGCGTCAGGTGAACACCATGGACCTTCTCTCTAGGACCCTCTCTGAGCTGCACCTCAACTGCCTTGATGGAGTGATGCACACCAACTCCGTAAAGAGGTCTGAGCGCAAGGCCCGGCTGCAGCGGGGCAGCTCGTCCTGGGACAGCAGCGACCCGCACTGCCAATACTGCATCAGCTACGGCAAGCGACTCAAGCGCCTGTCCTGCGGCCACACGTATTGCGGCGCCTGCGCAGACCGCATCGTCAACGAGGCCTTCCAGGACATCGAGGGGCTGTCGGAGTTCCCCTGCCCCATGTGCAAATCCATCCAGCGCCTGGGGTCCATCAACTACGGCGCAATGTGACCCCTAGCCGCTCCTCTAGACAGCCCGTCCAGGCGCCTCACCCAAGCGACTTGACGCCTTTCCATCCACCGGGGCGGATTCGCTCCCCGGACCATGCATGGGATCTTTATGAGGACAGGGGTCCTCAAACACAGGACGCGCAAAAACGACACAAAATACAGCgggatttgtatatattttttatcaacaCGTATTTTGTGCAGACTTCCAACAGGTGAGTTTGAAGACTGGCGTTATTCGACTTCCTAAAATAGGATTTTAAAGTGACTTCTACAAATGCTGCGCAGTTTGAAGGTGATGCTCCGCTTTCCAAACTCCAAACTGTGTCTATTACCAAACAATGAATGCACCACAGTTATCTCAGGGCTACGCGTTTTAACTGATTGTATTATTGCTTTGCTAATTTGTAACCATAAGTGTTCATCAGTCAATGCCAAGAGTTTCTTGGAAAACTGTTGTCACTGCAGTCGCTGCGTAAAAGGAGAGCATCTGAAGAAACGGTCAACTAATTAAACCCAGCAGCTCGTCCAGTTAAATGGTTCAGGATTTGTACAAAACACACTCAGATACTTGGTGAAGACAGTCTCAGGTCTTTactctgtaaatatatttccttcaaaagatatttgtgtatatatacgttttaatttattttttaacttccCACCTTCCAATTATACTTCTGTTTATATTGGCCGAGACAATTATGCAGCATTATAGAACCAGTGAAGTGAtgatgttgaaataaaatattaaaaaacaaacaaacaaaaaacgtctGTGTATTGTGTATACTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173034 lncRNA downstream 322 21034530 ~ 21039767 (-) True G137601
TU173023 lncRNA downstream 83711 20951938 ~ 20956378 (-) True G137591
TU172975 lncRNA downstream 123807 20832999 ~ 20916282 (-) True G137559
TU172957 lncRNA downstream 210722 20819325 ~ 20829367 (-) True G137558
TU172899 lncRNA downstream 462246 20569818 ~ 20577843 (-) True G137517
TU173054 lncRNA upstream 54479 21096922 ~ 21097296 (-) True G137619
TU173063 lncRNA upstream 124015 21166458 ~ 21169358 (-) True G137628
TU173181 lncRNA upstream 261029 21303472 ~ 21306761 (-) True G137699
TU173183 lncRNA upstream 265775 21308218 ~ 21315238 (-) True G137701
TU173196 lncRNA upstream 321849 21364292 ~ 21364924 (-) True G137711
AMCG00012537 mRNA downstream 134328 20901724 ~ 20905761 (-) True AMCG00012537
AMCG00012527 mRNA downstream 177471 20859265 ~ 20862618 (-) True AMCG00012527
AMCG00012528 mRNA downstream 180886 20858725 ~ 20859203 (-) True AMCG00012528
AMCG00012526 mRNA downstream 205597 20832941 ~ 20834492 (-) True AMCG00012526
AMCG00012524 mRNA downstream 297091 20703429 ~ 20742998 (-) True AMCG00012524
AMCG00012545 mRNA upstream 77673 21120116 ~ 21121378 (-) True AMCG00012545
AMCG00012548 mRNA upstream 145734 21188177 ~ 21212016 (-) True AMCG00012548
AMCG00012547 mRNA upstream 182298 21224741 ~ 21230841 (-) True AMCG00012547
AMCG00012552 mRNA upstream 227297 21269740 ~ 21274408 (-) True AMCG00012552
AMCG00012551 mRNA upstream 240858 21283301 ~ 21290412 (-) True AMCG00012551
TU173042 other downstream 1658 21035163 ~ 21038431 (-) True G137608
TU172771 other downstream 769225 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 1129711 19904422 ~ 19910378 (-) False AMCG00012503
TU172548 other downstream 1246558 19714162 ~ 19793531 (-) True G137246
TU172550 other downstream 1246558 19744335 ~ 19793531 (-) False G137246
TU173202 other upstream 391221 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 454236 21496679 ~ 21502199 (-) True AMCG00012556
TU173345 other upstream 1035730 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other upstream 1035730 22078173 ~ 22088469 (-) False AMCG00012564
TU173344 other upstream 1061210 22103653 ~ 22120556 (-) True AMCG00012566

Expression Profile