RNA id: TU173094


Basic Information

Item Value
RNA id TU173094
length 2118
lncRNA type sense_over
GC content 0.50
exon number 7
gene id AMCG00012546
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21245663 ~ 21253003 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGATAATCTTCAACTACAGTTCATTTATAGGTGtaagTTCGGTTAATTCACTTTGGCATATGTAAAGCTGATTTTCTCAGCCCAGGAGTTCTGCGTGGCCATCTCTGTGTCGGTCTTTGGGTGCAAAGCTGTGTGCATTGCCAGCAGTGAGCCTGTGATTGTCATCCAGTGTGGGGCCAACCCTCAGCCAGCAACACAGCCCAGCAGTGCCCCGGTCTACCAACTGGCACCGGACACAGAGCAGGATGCTTTTCCAAAGACCCCCCCTCTGCAGTAtacagagtgacagagagagccGGCTGGACCTgcacagggggagagaggggaacacCGAGTCACCTGCACAGCCACCGCAGGGGGAGTCGGGTTTTCTAGATGAAGAGCCttttattaagaaataaacaaaatttaCCTATGCTGACAGGTTCCTCTGACAGAATTCCaggttttacccagtcccctGATTGTACTTTGGGAAACCTGTCCtagctgtgaaaatgtattaagGTGCTAGTTGCAATTTGTCGGATACTTGTGCTGCTGCAGGCGGTGAGGATTCTGCAAACCTGAGGAAATCTGCACAACACGAACATGACCACTGTGACTCTCCTACAGGAGAGGGAGGCCTGACTGCTTCCCATGAGGCACAGCGTCCATCAGAGCTGAGGATTGTGCTGCTGGGGGGGAGTGGACTGGATGGGAAGAGTTCATCAGGAAACACCATCCTGGGCAGAGAGGAGTTTACGACTGGGAGACTGACTAAGCAGTGAGAGAGGAGACAGGGTGAAGTGACTGGGAGGCAGGTCACTTTGGTCGCCACACCAGGCTGGTGGAGTGGTTCTGTACAGGAGACTCCAGAGCGGCTTAAACAGGAGAGATTGTGcgcagtgtgtctctgtgcccccCGGGACCCCACACTCTCCTCCTAGCCATAGACACACTATAGTGCTGTTCATCGGGGGGATGGACTGAGAGACACAACCATTGAGCAGCACATTGAGAGAGGAGGGAAGAGACTTGTGGCTTGTGGAGAAATGTGGGAACAGGTATCATGTTCTCAATAACAGCCACTGGAGCGATGGCATTCAGGTCACAGAGCTGCTGAAGAAGATAGAGAAGATGGTAGCAGAGAACAGGGGGATGTGTTTGTTAGTAAGAATAGTctgcaggagctggagaggagagagactaTTGGAGGAGCTGAAACAGAGTTGTTAGGAGAGTCAGAGACGGAGGAAAgaggagctgaaggagaagaTGAGAAAGACTATGGAGTTAGAGGAGCTGGGGGAGGAGACGGAAGAATCCACATGGCCTGTGAGGAGGAGGAACAGCATTCAACAACCTTCTGACAtGAGTGGAGGAGCGGCTGCAGAGGGAAGCCCAGAGAGACCAGACTCTTCTGACTCCAGCAGTGCAGAGAAGAGAGATGATCGGTGGCAGATCTGGAGCAGAGTAAGATGAGAACAGGACTCATGGCTCTGAGATTGGTAGTCTGTCAGTCACAGGGAACCTCTCTGAACTCCTGGGGCTGGGCGCATAAAACATCTGCAGCGTTGAACtgaatcttttcattttcactgagATGCAATACATCTTACCCAAACCCCTAAGCAGTGATGTACATGCGGGGGAAGTCTGGGGGGAGGCACGAATGGCAGCCCTGGGCGCTGGAGACCGACTGTACACCACTGCTACCCAGTCAGTGCTGGTGGAGACCCTGCTGGTGAGCCCCTGAAAAGAGACTGTCCAGACTGCTGCAGTCAAACCCAGCTGTTAACCCTTTGGCACTTTTAAAGATAGGACTAGGTTTCTTTTCAGTTGGTTGGCTGCCACTGCCACTGTGACTCAACTGAAAATCCCATCGAGGTTCCGGTACATTTTGTGATCTTTCAATCTGATTTGGGTAAGAGTTCTGTCGGTCAAGATTTTTTAGCAATCCCATGGAAACAGCCTCATCTGGACAGCCTGCCTGGAGTTTTGTCTTGTAATGTTCTTGGCTCATATCTCAGtttgtcaatttattttatttctatgaaaaatatatttttaaagaattgagttgtttgtggtttttcaattgtttttgtgtgtgttgtccaataaaaacaataagat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173083 lncRNA upstream 24619 21220199 ~ 21221044 (+) True G137634
TU172996 lncRNA upstream 205914 21001968 ~ 21039749 (+) False AMCG00012539
TU172927 lncRNA upstream 488399 20757030 ~ 20757264 (+) True G137539
TU172871 lncRNA upstream 711704 20533752 ~ 20533959 (+) True G137494
TU172869 lncRNA upstream 751876 20489764 ~ 20493787 (+) True AMCG00012523
TU173073 lncRNA downstream 17365 21270360 ~ 21332070 (+) False G137629
TU173107 lncRNA downstream 55223 21308218 ~ 21309033 (+) True G137645
TU173146 lncRNA downstream 349004 21601999 ~ 21602314 (+) True G137669
TU173237 lncRNA downstream 527071 21780066 ~ 21786045 (+) True G137749
TU173242 lncRNA downstream 545508 21798503 ~ 21813863 (+) True G137754
AMCG00012542 mRNA upstream 78886 21148238 ~ 21166777 (+) True AMCG00012542
AMCG00012543 mRNA upstream 132716 21109538 ~ 21112947 (+) True AMCG00012543
AMCG00012544 mRNA upstream 136415 21105119 ~ 21109248 (+) True AMCG00012544
AMCG00012538 mRNA upstream 194858 21044249 ~ 21050805 (+) True AMCG00012538
AMCG00012540 mRNA upstream 207234 21013421 ~ 21038429 (+) True AMCG00012540
AMCG00012549 mRNA downstream 47069 21300064 ~ 21307188 (+) True AMCG00012549
AMCG00012550 mRNA downstream 62040 21315035 ~ 21317648 (+) True AMCG00012550
AMCG00012553 mRNA downstream 181450 21434445 ~ 21436426 (+) True AMCG00012553
AMCG00012555 mRNA downstream 185488 21438483 ~ 21443188 (+) True AMCG00012555
AMCG00012557 mRNA downstream 237854 21490849 ~ 21491478 (+) True AMCG00012557
TU173085 other upstream 14827 21224741 ~ 21230836 (+) True G137636
TU173082 other upstream 26500 21213597 ~ 21219163 (+) True G137633
TU173010 other upstream 186400 21056695 ~ 21059263 (+) True G137583
TU172848 other upstream 804993 20430925 ~ 20440670 (+) False AMCG00012521
TU173067 other downstream 17365 21270360 ~ 21332070 (+) False G137629
TU173071 other downstream 17365 21270360 ~ 21276736 (+) True G137629
TU173076 other downstream 17365 21270360 ~ 21293405 (+) False G137629
TU173102 other downstream 50230 21303225 ~ 21316451 (+) True G137644
TU173256 other downstream 601711 21854706 ~ 21876542 (+) False G137764

Expression Profile