RNA id: AMCG00012547


Basic Information

Item Value
RNA id AMCG00012547
length 3162
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00012547
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21224741 ~ 21230841 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTGTCCAGATCATGATTGGACTGTTTAATGTAGGCTCTGGAGTTCTTGTGGAAAGAGAAATGGACAGCATAGGGTTTCACATCGGGCTCCCATTTTGGCCATCACTGATATACATCATCTCGGGGGCTCTGAGTATTGCGGGGGAGAAGCAGAAGAAGACTGCTTGTCTGCCTGTGATTGTCATCCAGTATGGGGCCAGCCCTCAGCCAGCAACACAGCCTAGCAGCGCGCCGTCCCACCAGCCAGTGCCGGACAGAGAGTGGTCTTCACAACCTCACCCCTCCGCAGGACACAGAGTGACAGAGCCATAGGCTGATTATGGAgggtgaggtgggggggttgtgagCGAGAGACGGGACCACTGAGACATTGAAAGTACACTAGAGACACTACCTGGATGACTGCTTTTCTGTAGTTTCTTCTCAATGTCTGCTCATCTGAAGCCCGTTTACTGACGTCTCTTTTAAAGCAGGTTGTGTAGCCGGGGAAAGAGAACTTTGACACTCTCGGAAATTTGGAAAATGTCAGCTTTGGAATATCCTTTGTGTCCATGTAACGAGATGGTGTGATTTTCAACATGTTCTTCCtcattctgttttctgttttgttttgttttgtttggtggtggttttaacatattttaacatcTTGTCTTATTATGTCAGAGGAAATGActttttatattagtattatggaagtcatttagcagatgctaaATGGTTAATGGTTGTAAAATGCACTAACATACAGTTGTCTACATGTACACAGCAATAGAAAGATAAGAGCATcactatattaataaataatgacagtGCAGAACATGAAGGTTGATGAGAAATCAGAATGGTCTACAGGTGCAATCCAAACTGAGGTCCTGGGAGGATGGTCAGACACTGCAGTGCTGAGGCTCATCCACACTATGgggcagagagcagagaggagagtCTGGGGCAGTCAGATGCCTGAGGGAAGAAGTGGCTGACAAAAAGTGTCAACCAAAGGAAATCAAGAAAAGTAGTTCAAATTCTAGGACACGGGTTGGTAACAGACTTGACCTTGACTGTATGTCTCGATTCAAATCATGCAGTGGTTGCCATTCCTGCGCCTGGAGGATTGAGCTCTTCACTGTGTCCTTACCTGAACTAATGATGGTCTTGTATCAGCCTTTGgcctttgttttcagttcttaAACATGTGCAGTCAGGTCAGTAGGGAAGAATGGGTCTGGAATGGAAACCAGCAGAAACAGGGAGCCTCCTAGACCAGGGTTAGGATCCActgaaacaacacatttgtCAATATGATCTGCGTGTGAAAAGCAAACTGAACTGACATTTTATTAGGAGTATCTTTCGAAAAGGGGTGGATGGGAAATCTTATGACTAATCTGTGAGTCCCCGTGAGATTGTAAACATGATTGTGAACATCTCTTGGCTGCTGTCATTTGAATAATGATGTCCATGTAAACACCCTTCATAAAGAGCAGCTAAAGGGTCAGTGGTTCATAGATCCCGGTGCCCAGAACCCTGCTTTCCCAACTAGTgttcaaacacagacactgacttGCAGTGGCCTAGCCTAAGGGGGCTACCATCTCCAGTCGCACATTTCGGTGAAGTTGTAGAAATGTTGACCACCTCCCCAGCCCGCCTCATCAGAGAAAGCAAGTGAGAAACCATTATTCTGATCATCTCACAACACAACCACCACCCCCTTTCAGAGAGTCTCACTGTGCACTGCAAAGCTACGATGGCATTACTGGAATCTATAGTTTCATCATTGTTAATTTTCTTACCCTTGAACCCCTGGAAAATAAATTGTCTGGCTACACTACTGCTGacctgagaacaaaccagcagAGGCTAAGAGAGCCGAGATGTTCTGAAATAATGGGTCTCCTTCATTGGGTGTAGTGAATACATCGCCATTCATCAGCCAAAGCAGTTGTCACGCACTGTAATTCAACCCAAGTTTTTCCAAATGCCAGAAATTAAAAGATATAGCATTGTATAGCATATTAAGAGTGAAAACTCCCGAACAAAtgcttcaaatgtgttttttttaacattccaaTTTCTCCCAAAAATTGGAATAAGGCAACACTGTTATCCTCCAGTAACAAGGATCTGATTTGTACTGTATACACTGTCCCTTCTGTGTCCTCGGTGCTGTTGGACTCTGCATGACCTTCTCTTCTCTCCTGCCCCTTCCTGCTGTTGACTCCCAGATGACCCCTCCAGCTGTCTTAGAGGACACAGCACATGCAGTGTAAACACACCGACCCTCGATAATGAGACCATGTCCGTTGATCAACTGGGTTTATCACTGCTGCTCCCAGATGTGTTTGGTTTGAATCCTTAATTTGTGTTCAGCTTCTCTCCTGGAAAACTACTGCAGGTGACTCAGTGTTCACTTGGGAATCATTGCCATTCACAGGATGATGGACACACTATGGTATTTGGCATGGACACACGTGTGTTTGGAGAGGGTGGAAGTCTGGGACATCACGGGGATGTGGGGAAGTGATATGGGCAGAATTGCATGGCCAGCCCctttaagaaaaggaaaagaaaactcCCATTCTTCTTCTTAAGAGCTGCAtaagtctttaaaataaactgccatTTCTCACAAATACCAGTTTCTAGAAGAGCAAAGATGGATGAATGGGTTTGCTTTGTCTTGGTTAGCATGCGAGGTATGTTCAAAGTATCACAATGGACTTACATGGCAGCTGATGTGGAGTGGCtgagtgtaataataatacaataataatataaatgctgGCATGTTCTTTCTAAGTAATTggcaagaaaataatttgaataatgaattaaaaaataataatcgagAAGGCCTGTCAGTGTCGGGTAACAATGATCTATTGTGCCAGTGGAACTGTGCTGATTTGATCGGCCGAGAGCTCACACATTCTGGTTTTTGCATAAGCAATTAAGTTCACCTCATGAATTACTTTGaacatcacaaaataaaatggatgaaTACTTAACGATATAAAAAATCACCTctattgtcattgttttatgGTTTGTGCAATGACACAATTTAGTAAAAGTAGGCCTATAGTGCctgaatttaatgtttacactactttgtttttccatttaaaggcGACTTTAAAATCCAGTCCTCACTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173063 lncRNA downstream 55383 21166458 ~ 21169358 (-) True G137628
TU173054 lncRNA downstream 127445 21096922 ~ 21097296 (-) True G137619
TU173039 lncRNA downstream 130745 21030092 ~ 21093996 (-) True G137605
TU173034 lncRNA downstream 184974 21034530 ~ 21039767 (-) True G137601
TU173023 lncRNA downstream 268363 20951938 ~ 20956378 (-) True G137591
TU173181 lncRNA upstream 72631 21303472 ~ 21306761 (-) True G137699
TU173183 lncRNA upstream 77377 21308218 ~ 21315238 (-) True G137701
TU173196 lncRNA upstream 133451 21364292 ~ 21364924 (-) True G137711
TU173193 lncRNA upstream 194330 21425171 ~ 21426245 (-) True G137709
TU173220 lncRNA upstream 419922 21650763 ~ 21657742 (-) True G137733
AMCG00012548 mRNA downstream 12725 21188177 ~ 21212016 (-) True AMCG00012548
AMCG00012545 mRNA downstream 103363 21120116 ~ 21121378 (-) True AMCG00012545
AMCG00012541 mRNA downstream 182298 21040118 ~ 21042443 (-) False AMCG00012541
AMCG00012537 mRNA downstream 318980 20901724 ~ 20905761 (-) True AMCG00012537
AMCG00012527 mRNA downstream 362123 20859265 ~ 20862618 (-) True AMCG00012527
AMCG00012552 mRNA upstream 38899 21269740 ~ 21274408 (-) True AMCG00012552
AMCG00012551 mRNA upstream 52460 21283301 ~ 21290412 (-) True AMCG00012551
AMCG00012554 mRNA upstream 118604 21349445 ~ 21358802 (-) True AMCG00012554
AMCG00012556 mRNA upstream 263386 21494227 ~ 21497187 (-) False AMCG00012556
AMCG00012559 mRNA upstream 378733 21609574 ~ 21635426 (-) False AMCG00012559
TU173044 other downstream 182298 21040089 ~ 21042443 (-) True AMCG00012541
TU173042 other downstream 186310 21035163 ~ 21038431 (-) True G137608
TU172771 other downstream 953877 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 1314363 19904422 ~ 19910378 (-) False AMCG00012503
TU172550 other downstream 1431210 19744335 ~ 19793531 (-) False G137246
TU173202 other upstream 202823 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 265838 21496679 ~ 21502199 (-) True AMCG00012556
TU173345 other upstream 847332 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other upstream 847332 22078173 ~ 22088469 (-) False AMCG00012564
TU173344 other upstream 872812 22103653 ~ 22120556 (-) True AMCG00012566

Expression Profile