RNA id: AMCG00012551


Basic Information

Item Value
RNA id AMCG00012551
length 3334
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00012551
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21283301 ~ 21290412 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgcaacaaaaataatgtcCTTGTCTATAGGCTATAGTGTGAGCTCCCCTGGAGCTTCCAGTTTTCTTGGACAAAGGAGGAGACTTGTTTTTTACAGAAACAGTTGGCAACCACGGTTGTGCAGGAAGCTAGCGTTTCCTTAAACTTGTCGAATCAGCATTCATTCCTTCCACAAGACACAAAGAAGGGGGGATATGCGGTTACTATATTGCGATCGTCCGGGTTGTAAAGACAGAAACGAAAGACATACGACATCACTCATTGTGGGAGCCCTGACCAGCTGTTTAAGATGTTAACCTCTGTCCCCACTAACGGGGGCATGGTGATCATCACCCAGATGTGCCCACAGGGTCCAAGCGCTGTGCCCACTGGTGCTCCCCAGGCCGAGTCGGTGCTGCCACACAACTACACCTCCCCAAGGGATGCATCTCTAAAGCGCTTTGTGAAAGGAGAGCCCACAGCCCTGGGGGTGGTCCAGATCATGATCGGCCTTTTCTTTATCGGATTAGGCGTGGTAACTCTGCAAGAGAGATTTATAGTAGGAGTCCCAATTTGGACAGGGGCAATGCATATTGTCTCTGGGGCTCTGAGTATTGCAGGtgagaagaggaagaaaaataacatctgtCTGATCAAGGCAGCCCTGTCCATGAATATTGTGAGCGCGAATAATTTGTACATGGTGGCAGTGTGGGTAATTCTGTTTTTCTCGATCCTGGAGTTCTGCGTGGCCATCTCTGTTTCGGCCTTTGGGTGCAAAGCTGTATGCGATGGCAACACTACGCCTGTGATTGTCATCCAGTATGGGGCCAACCCTCAGCCAGCAACACAACCCAGCAATGACCCAGGCTACCAGCTGGCACCGGACACAGAGCAGGACACTTTTCCCAAGACCCCCCCTCCGCAGTAtacagagtgacagagagagccGGCTGGACCTgcacagggggagagaggggaacacCGAGTCACCTGCACAGGCACTGAAGGGGGAGTGGGGGTTTCTAGAGGAAGAGCCATGAAGTCAGCCATCTTCAGAGCTGCCTTTCACACACTGTGTTTACAACTCGCCCTCGATGCTATCAGAGTCCTGCTGGTTGGATGGGTTTAGCTCCACTGATCACTTCCTCTCCGCTTCAGTGAGACGAGATGGACAGCTCCATCAATGCTGCAAATATATTACTacacatagttttttttttttttaatgctttaattaatgaaatttaagaaataagcaaataaatctATGCAGACAattcctgtctctctgtcctttGAGAGACGCCACTTATCAGGGATATCAaacctgcattttaaattcaatgcaGAGTTTCCAATGGACCAGATGCACAGAGGTCTTGAAAAGTACCCAGTCTCTTGTCCACAATACACCACTTTCAAGGTTGTCTCATACAATGGAGACAAAACAGGTTGTATTTGTGGGCATCAGAGCTACCCTTTTGTGGTGGCTCCTCCCTTCATTTAGAGTCAGATTAAGGTTATTGGTTTAATTGTAGTTCTGGTTATGATCACTGCAGACGCCACTTTTCGGATGTGACTTACTACATTTCTGTGCCTTGTGCTGGTTGGATGGGGTCTGTTCCACTGCTCACTTCCTCTCCCAACTTCAGCGACATGAGATGGACAGTATTTTATTACTGTCACTTTGAATagcaaaataattgaaaaatcaaTGACAGTTAACTAAATGCATTGTTATAAATATAGTTAAGGCTGGCAATTGACATACATCAAGGTACAAACTAAatcgataggttgtgaatgcaaccccggttatctgagagagaatactacccaaaggggatgGGCTTAAGCCTGTTACCAGGGCCCCTTCCTGGTTCCTGCTTGAATATATtgcataatgtattgtaataaatCCTCTATTTGCTTGAAGTCAAAGGACTCCCGCACAACCTTGCAGCTTTTATGTAGCATTCTCTTTTTTTACATATCCAGGGTTGCATTCTCAAGTCGAGAATACTACCCCAAGGGTGAGGGGTTCAAGCCGCTGAAAGGGAGAACGCCGTCAGGCTGGTAAGGATACCAGCCCTGAGGCCATAACCTGCTAAGGAGAAGGactcaacaaataaataattttaacacAAGGAACAATGGGACCACAGTTACGCTCCACTGGAATAGAATGTGAACAGCATCACTGCATTTATAAATTAGTGAAAGCTGGATGCTCTTGTTGTTGTAGTATCACCGATTGACCGAAGGGCTGCAGAGACACAGGCTGAACTGGTTTCAGTAACAagttgggtttatttatttactattatatGTTCTCCCACATTAATGTAACAGAACACAAATACCTTGCCAACACTTCAGGGGGGGTCCCTAACAACAAAGGTTCAAAACATAATGTCAAAACCCAGGGCCGGCTGAATAGTCTTTCCAATATTCCCTAATGAATTTAAGGTAAAAGTGACATTAACTCTAGCTAACTAGCTATTTAAATGAGCGAGCGTTACTAGTATCGTCCAAAGTAAGTTGGCTAGTTGTAACACTGCTCCAACAGTAACTATGCAATTAGATAAACTATtcattcatcacatcacatcacctCTGTTCTTATAaatttttcctcctcttcttctttttcttccttgggCACCAGAGGACTTTGGTCTTTTTGGCATAGTTTGAAGTAGGCTATTGATGCTAATTTATCATTTTTCGTGTTAAGTGTCACTCACTGCTTCAGATAACTGAACTCGCCCCCCCCCAATCAGGTCAGTCTAACTATGAGATTGgcaggggggttggggggattGATGTGCCAGGATAGGGTAAAGCTGTGGGCAACAAAGGAAATACGGCCTAATAAGTGGGGGCTTTcgcttttttttaatattttgaattaatagtattaaaatagtattactaaaaaatatttaaaaataaataaataaaaatcttcaCTCATTCGGGCACCCCTATGGATGGACAGAACTCTAGCATTTGCCTATTGCGCCTATTACACGGGCCGGCCCTGTCAAAACCAAATAATACTTAACTGCAAAAATCtcttttaaatacagcaaaagTTTAATTCAGTACATGAGGAATTCAACTCACCATCCCCCAGGACTCATGGTTTTGAAATAACTGgcttcacttcctcctttaatACAATGTGTTCTggttatttgattttttttgtacagaagACACTTAAAATCCCCTGCTTCCAAGTCAGAGGAGTTTTTGCAAAATTACCTAGCCAAACAATAAAAGACTTAGTATAACTCTGGACTCCCAGTTTATGTTTTTGCTTGATTTCCTTGTAtttgtcagtttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173063 lncRNA downstream 113943 21166458 ~ 21169358 (-) True G137628
TU173054 lncRNA downstream 186005 21096922 ~ 21097296 (-) True G137619
TU173039 lncRNA downstream 189305 21030092 ~ 21093996 (-) True G137605
TU173034 lncRNA downstream 243534 21034530 ~ 21039767 (-) True G137601
TU173023 lncRNA downstream 326923 20951938 ~ 20956378 (-) True G137591
TU173181 lncRNA upstream 13060 21303472 ~ 21306761 (-) True G137699
TU173183 lncRNA upstream 17806 21308218 ~ 21315238 (-) True G137701
TU173196 lncRNA upstream 73880 21364292 ~ 21364924 (-) True G137711
TU173193 lncRNA upstream 134759 21425171 ~ 21426245 (-) True G137709
TU173220 lncRNA upstream 360351 21650763 ~ 21657742 (-) True G137733
AMCG00012552 mRNA downstream 8893 21269740 ~ 21274408 (-) True AMCG00012552
AMCG00012547 mRNA downstream 52460 21224741 ~ 21230841 (-) True AMCG00012547
AMCG00012548 mRNA downstream 71285 21188177 ~ 21212016 (-) True AMCG00012548
AMCG00012545 mRNA downstream 161923 21120116 ~ 21121378 (-) True AMCG00012545
AMCG00012541 mRNA downstream 240858 21040118 ~ 21042443 (-) False AMCG00012541
AMCG00012554 mRNA upstream 59033 21349445 ~ 21358802 (-) True AMCG00012554
AMCG00012556 mRNA upstream 203815 21494227 ~ 21497187 (-) False AMCG00012556
AMCG00012559 mRNA upstream 319162 21609574 ~ 21635426 (-) False AMCG00012559
AMCG00012561 mRNA upstream 409639 21700051 ~ 21703968 (-) True AMCG00012561
AMCG00012562 mRNA upstream 448544 21738956 ~ 21740372 (-) True AMCG00012562
TU173044 other downstream 240858 21040089 ~ 21042443 (-) True AMCG00012541
TU173042 other downstream 244870 21035163 ~ 21038431 (-) True G137608
TU172771 other downstream 1012437 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 1372923 19904422 ~ 19910378 (-) False AMCG00012503
TU172550 other downstream 1489770 19744335 ~ 19793531 (-) False G137246
TU173202 other upstream 143252 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other upstream 206267 21496679 ~ 21502199 (-) True AMCG00012556
TU173345 other upstream 787761 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other upstream 787761 22078173 ~ 22088469 (-) False AMCG00012564
TU173344 other upstream 813241 22103653 ~ 22120556 (-) True AMCG00012566

Expression Profile