RNA id: TU173211


Basic Information

Item Value
RNA id TU173211
length 1715
RNA type TUCP
GC content 0.38
exon number 3
gene id AMCG00012556
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21494227 ~ 21502199 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacaacaacaaNNNtaataataataataataataataataataataataataataataatacaattatcttGTAATATTACGCCAGCGTGTAACATCTGAACAGCAACATTTTACTAGTGAGTCTTGAGCTCACTCTTATAATACACCACAGCACCACAGTGCAGTCAATAAGCATCGCACGTTTGGTTGGATACAGAACTCCTTAAGCGTGATTAACACCCGGTACACTGTAAATCACCTGCCTTCTGCTAAAAACACCAGTAATGGGATTATCACTGTTTTAGGGCTACTGTAATCATACTGAGTTATAAAGGTTTTCATActgttcatttgaaattgtCATCGTGGCATTTATTTGGTTAATATACTGTATCAATGCATTGTATAATACTATATACCATATCTAtaacactttttaatattttaaaaccacaccATAAAGAATGCAACCATCTGGTGAAATCAATCGTATTGTGATTGCAAATATTGAAGGCACttacatacatttaacagtCAAATATTTGTCACTATGGTATTGGACTGtatgaaaacatttctgaaaagtatttggaaaatgtattatttttacttacCCCAAGTTGACTGCATCGTTCCAGTTGTCTGAAAGTTGATAATTGTGGTAAGAATACGTATATTGATCTATTTGACCTTTACTTGAAAGTTTTACATCACTGAGGGCAGACGTTTGCGCAAAAGGAACCTCGGAGAGTCCGTGgaacataatttatatatgtcCACTGAGGTTATATTTTGGAGAtaccaattataataataataataagaaatgaTTTCAGTCAATATGTTCAAGTCCTTACACTGCCATAGACGTTTGCAGTTTGGGCTTTGTCAACTGACACGagcaatgtaaatatatatttttcataaataaattgaacaaCGAAAACGTAgaggatgtttttttccccacaagcTCTCTTGAAAATGTTTGCAGGTGCCACCTCTATGTCTTCCTCTGTGTTTGAGTCATTTAGAACTCAAACCGGACATGAAGAAGTCAGGAGGTGGGGTCACAGACATATTGAAGATATTGAAGTGTATGTATTGATGTGTCTGCTGATACTGACAATCTCAGTTGAAAATCGCAGCACAGTTTTGGAAGCTCAAAGATACAGACTTCCCACAAACCATTTTTCTGCCTGATAAAATTTACAGTTGAAGCACAAATGGCCGCACAACAACTAGTGGAAGATGTGTTTCTAAACTATGGCAAAGAGTTTTTAAGCTTCAGCTGTGACAAGATGCTGGAGATGGTTACACTGGCCCTGAATGGCGAGCAGAATGTAAAAGGAAAGTTTGCAAAGGAGGAGCTTAAGAAGGTCATGGACAGGCTGGAGGTCATTTATGAGGAGATCGGCATGGAGGCAAAAAAGAGTTACATGGATGTGCGCTTCTTCCAGGTGGAGCAAAATCTGATCAACCAGTTTCGCAAGTACATGGAATTCCTGTACGCCTCACCTGAGACCAAAGACACAAGGAAGGACCTCTTCCTGACACACTTCAGTGAAGTGCAGGGGGAGAAAAACCTCCACACTCTGTATGATAATCTGGGTTCCATTCTGGACACTGTGCTCCAATATGAGAATAAGAGTCGGAAACCCTTGGAAGAATACTGTAAGGGGATGGAGAAGCTCTTCAGTGTGGGCATCATTGCCTTACTTGGTCATGCTGCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173193 lncRNA downstream 70434 21425171 ~ 21426245 (-) True G137709
TU173196 lncRNA downstream 131755 21364292 ~ 21364924 (-) True G137711
TU173183 lncRNA downstream 181441 21308218 ~ 21315238 (-) True G137701
TU173181 lncRNA downstream 189918 21303472 ~ 21306761 (-) True G137699
TU173063 lncRNA downstream 327321 21166458 ~ 21169358 (-) True G137628
TU173220 lncRNA upstream 148564 21650763 ~ 21657742 (-) True G137733
TU173230 lncRNA upstream 184831 21687030 ~ 21687264 (-) True G137742
TU173331 lncRNA upstream 573486 22075685 ~ 22076815 (-) True G137828
TU173350 lncRNA upstream 625746 22127945 ~ 22128292 (-) True G137842
TU173355 lncRNA upstream 678632 22180831 ~ 22181039 (-) True G137847
AMCG00012554 mRNA downstream 137877 21349445 ~ 21358802 (-) True AMCG00012554
AMCG00012551 mRNA downstream 206267 21283301 ~ 21290412 (-) True AMCG00012551
AMCG00012552 mRNA downstream 222271 21269740 ~ 21274408 (-) True AMCG00012552
AMCG00012547 mRNA downstream 265838 21224741 ~ 21230841 (-) True AMCG00012547
AMCG00012548 mRNA downstream 284663 21188177 ~ 21212016 (-) True AMCG00012548
AMCG00012559 mRNA upstream 107375 21609574 ~ 21635426 (-) False AMCG00012559
AMCG00012561 mRNA upstream 197852 21700051 ~ 21703968 (-) True AMCG00012561
AMCG00012562 mRNA upstream 236757 21738956 ~ 21740372 (-) True AMCG00012562
AMCG00012563 mRNA upstream 525419 22027618 ~ 22039234 (-) True AMCG00012563
AMCG00012564 mRNA upstream 576542 22078741 ~ 22082729 (-) False AMCG00012564
TU173044 other downstream 454236 21040089 ~ 21042443 (-) True AMCG00012541
TU173042 other downstream 458248 21035163 ~ 21038431 (-) True G137608
TU172771 other downstream 1225815 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 1586301 19904422 ~ 19910378 (-) False AMCG00012503
TU172550 other downstream 1703148 19744335 ~ 19793531 (-) False G137246
TU173345 other upstream 575974 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other upstream 575974 22078173 ~ 22088469 (-) False AMCG00012564
TU173344 other upstream 601454 22103653 ~ 22120556 (-) True AMCG00012566
TU173508 other upstream 1419684 22921883 ~ 23049378 (-) True G137974
TU173535 other upstream 1601268 23103467 ~ 23120688 (-) True G137996

Expression Profile