RNA id: AMCG00012559


Basic Information

Item Value
RNA id AMCG00012559
length 1239
RNA type mRNA
GC content 0.57
exon number 13
gene id AMCG00012559
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21433664 ~ 21635426 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGCAGCGAGCATGTCGCCTGGGACATCCAGAAGCGATGTCCCGCTCCTACGCTTCAAAAGCCCGGATGAGGGGCGGGGCTTGTGCCTCAGTTCAAAGCGCGGGAAATTAAACATGTGGGTAGCTGAAGCCCTGCACTGTGAGGCTGTCCCTGGTGTCCTGAAGNNNNNNNNNNCTGGTGCTGGCAGAGTGTGTGGCATCTCGAAAGAGGGCAAAGTTGTGGACTTCCGTGACGATGGTTGGGTTGACCTAGAGGCATCTGGTAAACATTGGCATTGTCTGTCTAAACCACAGGCCTGCACTGAGCTACGATGGCTCTGGCAGTGTGTCCTGGATGGCCGTCCCAGGCGAGCTCAAGTACTACTCCTGTGGGCCTGTTGGGTGCTGGGGAGCTCCCTGTCCATGGTGGAAGTGAGCGCAGATGGTGAAGTGCATGGAGTGAACAAACATGGCTCGGTATTCAAAAGGATTGGTGTTAAGAAGCAAAAAACCCGCCGGGTTTTCGGGCATGCACAGATCGCCCTCAATGCCGAGGAGTTTGGGTGGATGGAGGAATACCTCGGCATTCGGGGCAATCTGCCTGGCAAGCCGTGCCctctcaaagaaaaacaaaggccAATTGACTCTGGAGAGCAGGAGGAGAGTGAGGCATCGGGGTCAGAGGGGGGACAGCTCCCTTCGACTCctaggaggaagaggagggccCCAATTCACCTTTCAATTGAGGGGGAGGGAGTGGCATCAGGGTCAGTGTGGGGACAGCTCCCTTCACCTCCAAGGAGGAAAAGGAGGGCCCCCCTTCACCTTTcaagtgaggaggaggaggaggaggaaaggGAACCCAGGACGCCAACCAGCATGGTCCAGCTGGAGCACTGTTACTCTGTGTTGAAAAACATCCCGGCCCCCACCGCTGCCAGGAGAGGAGCCAGGAGGAACCTGGCAGTTGAGATAGGGGGCACTGACACAGAGGAAGCGGCAGGCGCTGGGCAGTCTGGACCAGACCAACCCTTACCCCTCCAGCCTGACCTCCCCTCATCTCCCCTTGCCAACCCACTCTCAGCGGTCTCCTCCACCTACAGCTCCCCGTCCTCCTACAGTGGGGATTTCTATTTGAGGGATTGGGAGGTGGATGGCCAGGGGGAGATAATCCGGTTGACTGAGGgtCTCTCCCCTACCAAAGACATTTCAGGGGTGGAAAAGCAAGGTGACTTTGACTGGAGGCACCTGAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173193 lncRNA downstream 183329 21425171 ~ 21426245 (-) True G137709
TU173196 lncRNA downstream 244650 21364292 ~ 21364924 (-) True G137711
TU173183 lncRNA downstream 294336 21308218 ~ 21315238 (-) True G137701
TU173181 lncRNA downstream 302813 21303472 ~ 21306761 (-) True G137699
TU173063 lncRNA downstream 440216 21166458 ~ 21169358 (-) True G137628
TU173220 lncRNA upstream 15337 21650763 ~ 21657742 (-) True G137733
TU173230 lncRNA upstream 51604 21687030 ~ 21687264 (-) True G137742
TU173331 lncRNA upstream 440259 22075685 ~ 22076815 (-) True G137828
TU173350 lncRNA upstream 492519 22127945 ~ 22128292 (-) True G137842
TU173355 lncRNA upstream 545405 22180831 ~ 22181039 (-) True G137847
AMCG00012556 mRNA downstream 112387 21494227 ~ 21497187 (-) False AMCG00012556
AMCG00012554 mRNA downstream 250772 21349445 ~ 21358802 (-) True AMCG00012554
AMCG00012551 mRNA downstream 319162 21283301 ~ 21290412 (-) True AMCG00012551
AMCG00012552 mRNA downstream 335166 21269740 ~ 21274408 (-) True AMCG00012552
AMCG00012547 mRNA downstream 378733 21224741 ~ 21230841 (-) True AMCG00012547
AMCG00012561 mRNA upstream 64625 21700051 ~ 21703968 (-) True AMCG00012561
AMCG00012562 mRNA upstream 103530 21738956 ~ 21740372 (-) True AMCG00012562
AMCG00012563 mRNA upstream 392192 22027618 ~ 22039234 (-) True AMCG00012563
AMCG00012564 mRNA upstream 443315 22078741 ~ 22082729 (-) False AMCG00012564
AMCG00012566 mRNA upstream 469243 22104669 ~ 22120095 (-) False AMCG00012566
TU173211 other downstream 107375 21496679 ~ 21502199 (-) True AMCG00012556
TU173044 other downstream 567131 21040089 ~ 21042443 (-) True AMCG00012541
TU173042 other downstream 571143 21035163 ~ 21038431 (-) True G137608
TU172771 other downstream 1338710 20261002 ~ 20270864 (-) True G137408
TU172597 other downstream 1699196 19904422 ~ 19910378 (-) False AMCG00012503
TU173345 other upstream 442747 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other upstream 442747 22078173 ~ 22088469 (-) False AMCG00012564
TU173344 other upstream 468227 22103653 ~ 22120556 (-) True AMCG00012566
TU173508 other upstream 1286457 22921883 ~ 23049378 (-) True G137974
TU173535 other upstream 1468041 23103467 ~ 23120688 (-) True G137996

Expression Profile