RNA id: AMCG00012562


Basic Information

Item Value
RNA id AMCG00012562
length 291
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00012562
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 21738956 ~ 21740372 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttagTAAAGCTCTGTATTCTGAGAGATGATCTGTATGTGTGGAACGCGACATCGGAGGAGATCAAACGAGCGTTCGTTACAACCAGGCTCAGGCCGTCCAGTACCCCCGTGCCCACGCTGACCGCTGCCCAGCAAGAGATGCGCTCCATCTTCTGCCTGAAGTTCGGCATGAACCCGGAGTGGTCACAGAAGTGTCTGCAGGAGAACGAGTGGGATTTTGACAGAGCCGCACAGATCTTCAGCCAGTTCCAGGCTCAAGGGCAGATCCCAGATGTGGCTTTCGAGTGA

Function

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173230 lncRNA downstream 51692 21687030 ~ 21687264 (-) True G137742
TU173220 lncRNA downstream 81214 21650763 ~ 21657742 (-) True G137733
TU173193 lncRNA downstream 312711 21425171 ~ 21426245 (-) True G137709
TU173196 lncRNA downstream 374032 21364292 ~ 21364924 (-) True G137711
TU173183 lncRNA downstream 423718 21308218 ~ 21315238 (-) True G137701
TU173331 lncRNA upstream 335313 22075685 ~ 22076815 (-) True G137828
TU173350 lncRNA upstream 387573 22127945 ~ 22128292 (-) True G137842
TU173355 lncRNA upstream 440459 22180831 ~ 22181039 (-) True G137847
TU173385 lncRNA upstream 568069 22308441 ~ 22326347 (-) True G137870
TU173460 lncRNA upstream 983605 22723977 ~ 22724234 (-) True G137934
AMCG00012561 mRNA downstream 34988 21700051 ~ 21703968 (-) True AMCG00012561
AMCG00012559 mRNA downstream 103530 21609574 ~ 21635426 (-) False AMCG00012559
AMCG00012556 mRNA downstream 241769 21494227 ~ 21497187 (-) False AMCG00012556
AMCG00012554 mRNA downstream 380154 21349445 ~ 21358802 (-) True AMCG00012554
AMCG00012551 mRNA downstream 448544 21283301 ~ 21290412 (-) True AMCG00012551
AMCG00012563 mRNA upstream 287246 22027618 ~ 22039234 (-) True AMCG00012563
AMCG00012564 mRNA upstream 338369 22078741 ~ 22082729 (-) False AMCG00012564
AMCG00012566 mRNA upstream 364297 22104669 ~ 22120095 (-) False AMCG00012566
AMCG00012565 mRNA upstream 412047 22152419 ~ 22165738 (-) True AMCG00012565
AMCG00012572 mRNA upstream 847768 22588140 ~ 22601168 (-) True AMCG00012572
TU173202 other downstream 120186 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other downstream 236757 21496679 ~ 21502199 (-) True AMCG00012556
TU173044 other downstream 696513 21040089 ~ 21042443 (-) True AMCG00012541
TU173042 other downstream 700525 21035163 ~ 21038431 (-) True G137608
TU172771 other downstream 1468092 20261002 ~ 20270864 (-) True G137408
TU173345 other upstream 337801 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other upstream 337801 22078173 ~ 22088469 (-) False AMCG00012564
TU173344 other upstream 363281 22103653 ~ 22120556 (-) True AMCG00012566
TU173508 other upstream 1181511 22921883 ~ 23049378 (-) True G137974
TU173535 other upstream 1363095 23103467 ~ 23120688 (-) True G137996

Expression Profile