RNA id: TU173344


Basic Information

Item Value
RNA id TU173344
length 1792
RNA type TUCP
GC content 0.41
exon number 3
gene id AMCG00012566
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22103653 ~ 22120556 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGACTTTAAAAACAACGCCCTAAATCACAAGAATGCAAAGAACCAGCCTAAACTTGAGCCCTTGCTGAAATGAGACATGTTCCAACAATTCCTAAAAAAGTTCCAGATGTGTCCAAACGCTCTGGGGGTTGGCTTATGTGTAATGTTAGTTAGTAACCTGAGCTTCGTGCATAGTATATTaatcatcataaaaaataacagctaTTGATTTATATACTACCGTATAATAGTTTGTTTCCCCTCCTTACCATATTTTGTTAACGCAGAGTATTGTATTGCAGCATTTTCCACAGTGATTTCCTTTCCTGCCATCACGGAAGGTGGAATCCAGTGGTGTTTAGAGAGTGGGAGGATTCGGGAAAGGAGCCAGGATACCGCAAGAGCGACGGGGCTCAGAGAACGAGAAGTCTGAGCTGTTCACTTCGCAAGGAAACTTCTTAGCAGGAAATCTTGGCTAGAAATGGCGGTGAAGCACTCAGACCTGGAGAAGGCCATTAATACTCTGGTCACAGATTTCCATGCTGCTGCAGGTGATAATGGCAGTACGCTAAAGAGCAACGAGTTCAAAAGTCTTCTTTCCAGCCAGTTGCCCAACCTAGTCAAAGGTGTTAATGATGACCAGCTCATGGGAGACCTGATGAAGAAGCTGAACATCAAGGACAGCGAGGGGATCACCTTTAAAGAGTTCTGGGGATTAATTCAGCAACTGGCTACATCTCAGCATGGCCTGACCAGCCGAGACAAATCTGCAAAGTGTGGTTGCCAGCTCTCGTAAAACCCTGAATGGGGAGCAAGAATCCATTAGACCAGTGTTTTCCAAAACATCCTTGATGCCCTTTATCCAGTTCAGGGTATTGACCTAACTGGCACCTGttcatttatattatgttgCGTAACATTCCCTATTAGGGGAGCAAGGTGGCATAGTGGTTAGCACTGCCTCACAACTCCTGGGACCTATGTTTTATTCTGGCCCTGGGTGTCTGTCTGCATGAAGTTTGCATATTATCCCCATGGCTCGGTTGGTTTTCTCCAGGAGCTCTGGTTTCCttccacatcccaaagacatgtTGATCAACCTGAGCAGCTACTCTAAATCACcctgttcttgtgtgtgtgtctgtgtgtgtgtgtgtacattagTGCTGCCCTGCAATGGACAGGTGTCACGAGCAGGGTGTATCCTGTCTTTCAACCTGTGTACAAGAGGTTAAACTCTGGCTCAGCGCCACCCTGTACTTTATGAAGTGGTTATtaaagatggatggatgaatacaTTGTCCACTAATAACATgtccctgtttgtttttttaatgcaagatGTGCATATTTTCTTGTACAATGTtatgcagattttaaaatacatgatcTTGTGCTATCTTAGGACAGTTTCGGAATACACTGCTTTAGACTAATTTCTCCAAATTTATCTCCCACACCCCCATCCCCTTAACTGTTCCCACTAGACAACACTGAGCAACCAGTGTGGAGTCACATCAGGAACAAAGGGAATCTGAAAATACATTCTATATCAATACTGTGAGCCACTGAATTAGGGTTACTGGATACACAATAGTATGAAATGTTCTTTCTATAACATAGTATTATGTAAttcaacataatatttaatcaaatatggtatatgtttttgtttattttaaagttacagTACTCCGGCCATTATTTAGATTGCAATGAAAGTTATTAAGCATTCATGtaataaaaaagaagagaatTCACcttgttaaatataattttttaatggaataaaatgtttcatttattttaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173331 lncRNA downstream 26838 22075685 ~ 22076815 (-) True G137828
TU173230 lncRNA downstream 416389 21687030 ~ 21687264 (-) True G137742
TU173220 lncRNA downstream 445911 21650763 ~ 21657742 (-) True G137733
TU173193 lncRNA downstream 677408 21425171 ~ 21426245 (-) True G137709
TU173196 lncRNA downstream 738729 21364292 ~ 21364924 (-) True G137711
TU173350 lncRNA upstream 7389 22127945 ~ 22128292 (-) True G137842
TU173355 lncRNA upstream 60275 22180831 ~ 22181039 (-) True G137847
TU173385 lncRNA upstream 187885 22308441 ~ 22326347 (-) True G137870
TU173460 lncRNA upstream 603421 22723977 ~ 22724234 (-) True G137934
TU173467 lncRNA upstream 650368 22770924 ~ 22771248 (-) True G137941
AMCG00012564 mRNA downstream 20924 22078741 ~ 22082729 (-) False AMCG00012564
AMCG00012563 mRNA downstream 64419 22027618 ~ 22039234 (-) True AMCG00012563
AMCG00012562 mRNA downstream 363281 21738956 ~ 21740372 (-) True AMCG00012562
AMCG00012561 mRNA downstream 399685 21700051 ~ 21703968 (-) True AMCG00012561
AMCG00012559 mRNA downstream 468227 21609574 ~ 21635426 (-) False AMCG00012559
AMCG00012565 mRNA upstream 31863 22152419 ~ 22165738 (-) True AMCG00012565
AMCG00012572 mRNA upstream 467584 22588140 ~ 22601168 (-) True AMCG00012572
AMCG00012574 mRNA upstream 481622 22602178 ~ 22608156 (-) True AMCG00012574
AMCG00012573 mRNA upstream 511387 22631943 ~ 22640196 (-) True AMCG00012573
AMCG00012575 mRNA upstream 598782 22719338 ~ 22777684 (-) True AMCG00012575
TU173345 other downstream 15184 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other downstream 15184 22078173 ~ 22088469 (-) False AMCG00012564
TU173202 other downstream 484883 21433664 ~ 21618770 (-) True AMCG00012559
TU173211 other downstream 601454 21496679 ~ 21502199 (-) True AMCG00012556
TU173044 other downstream 1061210 21040089 ~ 21042443 (-) True AMCG00012541
TU173508 other upstream 801327 22921883 ~ 23049378 (-) True G137974
TU173535 other upstream 982911 23103467 ~ 23120688 (-) True G137996
TU173691 other upstream 1652947 23773503 ~ 23773998 (-) False AMCG00012594
TU173837 other upstream 2113948 24234504 ~ 24234867 (-) True G138207

Expression Profile