RNA id: AMCG00012569


Basic Information

Item Value
RNA id AMCG00012569
length 2555
RNA type mRNA
GC content 0.52
exon number 24
gene id AMCG00012569
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22220633 ~ 22320428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTCAGTGTGACCTGCCCCAAGCGCATGGAGAAAGCGAGGAAGCAGCACCGGATGGTCATCCTGACCTGCTGCAGTGTGAACTTGAGGCATCTTCTCACCAGATCCCCTAATATCTACTACTACCTACCAAATGGAACACGCATGTTAGAAAAGGAAAGTTCTGTGATACACTGTTACTATCATGGCACAGTCCGAGGATTTCCCCAGTCACGAGTTGCACTCAGCACCTGCAGTGGACTGCGGGGAGTAATTGTTGTCAGTGCCAACCAGAGCTACGTGCTGGAGCCTGAGGAGAAGATGGGTGACAAAGAAAAGGGTCTCCATGTGATGTATCCTACCTCAGAGCTGGAATTTGAATATGGGGGCTGTGGGGTTACCCATTCTGAAATTCCACACATTGATGTTTTGCCACAGCAACACAGGTGGAAGAGAGACATCCTCTCAGAGATCAAGTATATTGAGCTGGTGCTGGTGGTTGATCATAAAGAGTACCAAAACTATCAGAAGAACAATAAAACCATCATCAATCGGATGTTAGACCTGGCTAACCAAGTGGATTGGTTCTACAGGCCCCTAAATGTCCGTGTAGCTCTGCTGGGTATGGAGATCTGGAGCGACAAAGACAAGATCCTCGTGGACAAGAACCCCACGGACACACTCAATCGCTTCTTGGAGTGGAGAACTCATGAGCTGCTGCCACGACTGCGCCATGACAATGCACAACTCATCATgGGTGGATCTTTTGATGGCACCACAGTTGGAATGGCATCACAATCTTCCATGTGTTCTAAGGACCGCTCGGGGGGAGTGAATGTGGATCACTTGGTGAGTGTGCTTGGTATAGCATCCACAGTAGCACATGAACTTGGGCATAACCTGGGAATGAGCCATGACACACCTGATCGCCACTGTCAGTGCCAAAATGAGGCACGACTTGGAGGATGCATTATGGAACCGTCGACCGGGTTCCTGCCTGGACAGCTTTTCAGCAGCTGCAGTGCACAAGACCTAGCAGGCAGTCTGCTCCATGGAGGGGGGATGTGCCTGTTCAATGTGCCTGAGCCTGAGAGGCTGCTGGGGGGGCCACGCTGTGGAAATCTTTATGTGGAGAAAGGGGAGGAGAGTGTCAGGATCCTTGCTGTAATGCTACTACCTGCAAATTGGTTCCTGGGGCACAGTGTTCCTCTGATGGGATCTGCTGTGAAGACTGCAAGTTGCGTTCTGCAGGCTGGGTTTGTCGGGATCCCTTGGGTGAGTGTGATCTCCCAGAATACTGCACTGGGCATTCACCATACTGCCCCCCCAATGTCTTCATCCAGAATGGGCAGTCCTGCCAGCAGGGAGAGTCCTATTGCTACAGTGGAGTTTGTGCCAGTCTCTCCTCTCAATGTCAAGTGCTCTGGGGACCCAGCTCCAGATGTGTGTTTCAGCTCTGTCAACAAGAGAGGAAATAAGTATGGAAATTGTGGCCAGTTGCCCAATGGCACCTATATTTCCTGTCCTCAGCCAGATGTTCATTGTGGGAAAATACAATGCCAAGGAGGCAACGATCGTCCCTTGCTGGGTTCTAACGCTGAGATCATCACTACCACTGTGATGGTGAACCGCAGTGAATTCACTTGCCGTGGCACCTACTTCAACCTGGGAGATGATGTGTCTGACCCTGCCATGGTAGCACCAGGTATAGCCTGTGGAAAAGGCAAGGCTTGTGTGGACAGGCAGTGCCAAGGTGTGACAATTTTTGGTGTGCAAGAGTGTCAGAAGAAGTGTAACGGACATGGGGTGTGCAATAGCAATAAGAACTGCCACTGTCACCCAGGGTGGGCACCGCCTGACTGCAAGTACGGGGGCTATGAGTCTAACCCAGCAAGAATGGCCATgctcattatttttctcttcatccTGCCAGTGGCACTCTTGTGCCTGGCCTTGATTTATCGCCGCCGCATCCAAGGGCAGCACTGCCTGGGGAGCAACCCTTTTAACAAGGGTGACAGCCGACAGCAGAGCCGGACTCCAGTGAGAGAGCGGAGCAACATCCAAAATGGAGAGCAGGTGCAGCCACTGAGGTACCAGTGGATGCAGAATGCGGATATCCCACTCACGCCACCAGCCATCAAGGTTCTCAACAGACCTGCCCCTCCTAGTAAGCCTCTCCCACCTGACCCAGTGTCAAGAGATGTCCAGTGGAGCGACCAGCCGCTCCAAACAAGCCTCTACCCCCCGACCCTGTCCTCAGAGACAGCCAGATATTTGCACCTGCCAAACCACCTCCACCCCGGAAACCACTACCTGCTGACCCTCCTTTACGACCAGTTTCTGCAGTCTCACTGCAACATACACCAAGTGTATCATCAGTTCCCACCTATGGTCCACATGTTGCAGTTGTTCCCGCAAGACGtgcccctcctcctccagtTGGGGACCCACAACTATCCACAACACAGCCCCCTCATCCATTGTAACTGGAAACTGGATCTGATAGCACTGACTGCACTAATGGTCTCCTACTGTGACCTGACAGAACCCAACCCTTACTGCGCCCACTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173330 lncRNA upstream 143763 22075843 ~ 22076870 (+) True G137827
TU173317 lncRNA upstream 214955 22005381 ~ 22005678 (+) True G137814
TU173251 lncRNA upstream 262279 21836242 ~ 21958354 (+) True G137761
TU173255 lncRNA upstream 362303 21854706 ~ 21858330 (+) True G137764
TU173242 lncRNA upstream 406770 21798503 ~ 21813863 (+) True G137754
TU173479 lncRNA downstream 600761 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA downstream 601081 22921509 ~ 22922336 (+) False G137951
TU173523 lncRNA downstream 737658 23058086 ~ 23058391 (+) True G137984
TU173550 lncRNA downstream 842563 23162991 ~ 23163619 (+) True G138010
TU173574 lncRNA downstream 955236 23275664 ~ 23275950 (+) True G138034
AMCG00012567 mRNA upstream 26992 22172285 ~ 22193641 (+) True AMCG00012567
AMCG00012558 mRNA upstream 567333 21647378 ~ 21653300 (+) True AMCG00012558
AMCG00012560 mRNA upstream 574275 21642734 ~ 21646358 (+) True AMCG00012560
AMCG00012557 mRNA upstream 729155 21490849 ~ 21491478 (+) True AMCG00012557
AMCG00012555 mRNA upstream 777445 21438483 ~ 21443188 (+) True AMCG00012555
AMCG00012568 mRNA downstream 486 22320914 ~ 22329746 (+) True AMCG00012568
AMCG00012570 mRNA downstream 69774 22390202 ~ 22430060 (+) True AMCG00012570
AMCG00012571 mRNA downstream 131707 22452135 ~ 22455561 (+) True AMCG00012571
AMCG00012577 mRNA downstream 265273 22585701 ~ 22588205 (+) True AMCG00012577
AMCG00012576 mRNA downstream 345053 22665481 ~ 22669344 (+) True AMCG00012576
TU173274 other upstream 262475 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 344091 21854706 ~ 21876542 (+) False G137764
TU173102 other upstream 904182 21303225 ~ 21316451 (+) True G137644
TU173076 other upstream 927228 21270360 ~ 21293405 (+) False G137629
TU173071 other upstream 943897 21270360 ~ 21276736 (+) True G137629
TU173418 other downstream 244996 22565424 ~ 22566106 (+) True G137899
TU173473 other downstream 497525 22817953 ~ 22818458 (+) True G137947
TU173480 other downstream 567110 22887538 ~ 22888056 (+) False AMCG00012579
TU173653 other downstream 1389090 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile