RNA id: AMCG00012573


Basic Information

Item Value
RNA id AMCG00012573
length 915
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00012573
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22631943 ~ 22640196 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAGTAGTTGGTGATTCCATCACTTCTAAACAGACACAGATCTCCAGGACAGAAGGGGAATCTGTGACATTGAGCTGCTCATACTCTACAGACAGTAAATACACTTATCTTTACTGGTACAGACAGTATCCTTACCATACACCagaatacatactgtataaggAAGCATCATGGAGTTCTGGTTATAAGGCAAATTTTGCCAAAGACAGATTTTCTACTTCTGCAACTAAGGAGTCTACTACAATGGCCATTGCATACCTTATTCCCAgTTGTTTTTCAAACACTCAGGTCTTTCAGAGTCCCAAAGCTGAGGTCCTTGTACCAAATCAATTTCCAAAACTCTTACTTAATTCTTACAATGAAAGAAAGGTCGTTGGACGTTTCATCATGGAAATAGACAAcagaggaaaagaaacaacactTAAGATAGAGAAGGTGGATTTGCAAGACTGTGCTGTGTACTTCTGTGCAGGAGTGACAGGAAGGCAGCAGACAttgggagacagagacagagacagagacagagacaaagagagagactgcCGACTGCAAACTGCACGGGACAAGGAAGCAGAGCGGCCAGATTGGAACTGCGAGTGCTGGCGGTCCAGTGTTGCTGGGGCAAAAGCTGATGGAGTTTATCAGCCTGTGACTGAGCTTACATATGAAGGGATAAATACTGTTTTGAGATGCAATCATAGCATCACAAACTTTCAGTCTATGTTCTGGTATTTACAGAGACCCGTTAAGGCTCCAGAATACCTCATTCATGGATATGATTCTGCTCAACCCAATGGACGGTTCTCAATGATATTTGACAGAGACAATCGTTTGACACACCTTTCTATCACAAATACTGAAATAGAAGATGCAGCAACATATTACTGTGCAGTGGAGCCCACAGTGGTACACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173385 lncRNA downstream 305596 22308441 ~ 22326347 (-) True G137870
TU173355 lncRNA downstream 450904 22180831 ~ 22181039 (-) True G137847
TU173350 lncRNA downstream 503651 22127945 ~ 22128292 (-) True G137842
TU173331 lncRNA downstream 555128 22075685 ~ 22076815 (-) True G137828
TU173230 lncRNA downstream 944679 21687030 ~ 21687264 (-) True G137742
TU173460 lncRNA upstream 83781 22723977 ~ 22724234 (-) True G137934
TU173467 lncRNA upstream 130728 22770924 ~ 22771248 (-) True G137941
TU173470 lncRNA upstream 144541 22784737 ~ 22784943 (-) True G137944
TU173515 lncRNA upstream 363814 23004010 ~ 23029222 (-) False G137981
TU173518 lncRNA upstream 363814 23004010 ~ 23029222 (-) False G137981
AMCG00012574 mRNA downstream 23787 22602178 ~ 22608156 (-) True AMCG00012574
AMCG00012572 mRNA downstream 30775 22588140 ~ 22601168 (-) True AMCG00012572
AMCG00012565 mRNA downstream 466205 22152419 ~ 22165738 (-) True AMCG00012565
AMCG00012566 mRNA downstream 511848 22104669 ~ 22120095 (-) False AMCG00012566
AMCG00012564 mRNA downstream 549214 22078741 ~ 22082729 (-) False AMCG00012564
AMCG00012575 mRNA upstream 79142 22719338 ~ 22777684 (-) True AMCG00012575
AMCG00012582 mRNA upstream 241263 22881459 ~ 23005234 (-) True AMCG00012582
AMCG00012584 mRNA upstream 541008 23181204 ~ 23185663 (-) True AMCG00012584
AMCG00012587 mRNA upstream 617087 23257283 ~ 23488884 (-) True AMCG00012587
AMCG00012590 mRNA upstream 893399 23533595 ~ 23598058 (-) True AMCG00012590
TU173344 other downstream 511387 22103653 ~ 22120556 (-) True AMCG00012566
TU173345 other downstream 543474 22078173 ~ 22088469 (-) True AMCG00012564
TU173346 other downstream 543474 22078173 ~ 22088469 (-) False AMCG00012564
TU173202 other downstream 1013173 21433664 ~ 21618770 (-) True AMCG00012559
TU173508 other upstream 281687 22921883 ~ 23049378 (-) True G137974
TU173535 other upstream 463271 23103467 ~ 23120688 (-) True G137996
TU173691 other upstream 1133307 23773503 ~ 23773998 (-) False AMCG00012594
TU173837 other upstream 1594308 24234504 ~ 24234867 (-) True G138207

Expression Profile