RNA id: AMCG00012576



Basic Information


Item Value
RNA id AMCG00012576
length 733
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00012576
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22665481 ~ 22669344 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGGAATCAGATTGACCAGCAGGAAACTTCATTGTTGAAGACAGAAGACGAGATGGCTAAACTGCAATGTACCTTCAGCACAAGCAGCTTCAGCTATTACCTCCACTGGTATCGCCAGTATCCTGGGACAGCACCTGAGTTTTTACTGTTTAATGGGACAAGCAGCCACAGTGCAGAGTTTGCCAGAAAACGATTTTCTTCCActgcaaacaaaaccaaaggtTTAACAGTTTTAACTATTTCTGGTGCTCAGATGGAAGACAGCGCTGCTTATTACTGTGCACTTCAGCCCACAGCGGTATTATACAGAGAACATATGTACAAAAAAAGTGTTATACTGTGTTTAATCGATCACttattattccttattttgtacCACTTTTCTTTAGGCATGACACAAGGTGATTCAGTCCATCAATTTCCCTCCTATCATGTGTCAGAACAggagaaaataacattatattgtCGGTATGAAACATTGTCAACCCCCAACCTTTTCTGGTACATTCAGGATGGCAATAAAGCTCCACAGTTCATGATGAGTAACTACCTGAATGAAGATGCACGATTTAAAGACCGTTTCTCTGCACATCACGACAGCAATAAGAAGTTCTTTAATCTGACTCTATCTGCAGCTGTGTTGTCTGACTCTGCAACATACTTCTGTGCCATGAGGCCCACACTGTGTCAGCCTGTACATCTCCTCACACAAAAAAACCCTTGTACTAGATTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU173364 lncRNA upstream 339131 22308413 ~ 22326350 (+) True G137851
TU173330 lncRNA upstream 588611 22075843 ~ 22076870 (+) True G137827
TU173317 lncRNA upstream 659803 22005381 ~ 22005678 (+) True G137814
TU173251 lncRNA upstream 707127 21836242 ~ 21958354 (+) True G137761
TU173479 lncRNA downstream 251845 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA downstream 252165 22921509 ~ 22922336 (+) False G137951
TU173523 lncRNA downstream 388742 23058086 ~ 23058391 (+) True G137984
TU173550 lncRNA downstream 493647 23162991 ~ 23163619 (+) True G138010
TU173574 lncRNA downstream 606320 23275664 ~ 23275950 (+) True G138034
AMCG00012577 mRNA upstream 77276 22585701 ~ 22588205 (+) True AMCG00012577
AMCG00012571 mRNA upstream 209920 22452135 ~ 22455561 (+) True AMCG00012571
AMCG00012570 mRNA upstream 235421 22390202 ~ 22430060 (+) True AMCG00012570
AMCG00012568 mRNA upstream 335735 22320914 ~ 22329746 (+) True AMCG00012568
AMCG00012569 mRNA upstream 345053 22220633 ~ 22320428 (+) True AMCG00012569
AMCG00012581 mRNA downstream 190735 22860079 ~ 22862823 (+) True AMCG00012581
AMCG00012579 mRNA downstream 211015 22880359 ~ 22911656 (+) True AMCG00012579
AMCG00012580 mRNA downstream 266926 22936270 ~ 22950900 (+) True AMCG00012580
AMCG00012578 mRNA downstream 291854 22961198 ~ 22966195 (+) True AMCG00012578
AMCG00012583 mRNA downstream 373144 23042488 ~ 23092426 (+) True AMCG00012583
TU173418 other upstream 99375 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 707323 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 788939 21854706 ~ 21876542 (+) False G137764
TU173102 other upstream 1349030 21303225 ~ 21316451 (+) True G137644
TU173076 other upstream 1372076 21270360 ~ 21293405 (+) False G137629
TU173473 other downstream 148609 22817953 ~ 22818458 (+) True G137947
TU173480 other downstream 218194 22887538 ~ 22888056 (+) False AMCG00012579
TU173653 other downstream 1040174 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile