RNA id: AMCG00012577



Basic Information


Item Value
RNA id AMCG00012577
length 608
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00012577
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22585701 ~ 22588205 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCAAGGCAGCTGATGACTACCTCACTCCTAAACAAACAATGGTCACCGGGACGGAACATACATCAGTGACACCGAGTTGCTCTTACACCACAAAAAATGATAACGTTTATCTTTATTGGTACCGGCAGACTTCAACCCAGCCACTTGAATACATTCTTTACAAAGGAGCCCGCTCTTATAGCTCTTCTCTTACTGCAGACTTTGCTCAAGGTTTTAGGTCGGATGTACACAGAGACTTCGCAGAACTCTTCATTTCAGATCCCACCCCTGAGGACACAGCCATCTATTATTGTGCTCTAAAAATATCACAACAGATGTTTACAGGAATGAAGATGACATTGAAGTGTTCTTACTCTACAAGCATTGATTATGTCAATCTCCTCTGGTACCGACATTATCCCAACCATCAGGCACTGGAATACATCCTGCTTAGAGGAGCCTGCTCATGGAGTTCAGATTCAAACACTGCACATTTTGCTCAGAGGCGTTTTGACTCCACTGCAGACAGAGATTCCACAACACTCACCATTAAAAGTCTTACCTTGAGTGACACAGCCATCTATTACTgtgctctgagagagagacacagtgagaaATATTACCAAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU173364 lncRNA upstream 259351 22308413 ~ 22326350 (+) True G137851
TU173330 lncRNA upstream 508831 22075843 ~ 22076870 (+) True G137827
TU173317 lncRNA upstream 580023 22005381 ~ 22005678 (+) True G137814
TU173251 lncRNA upstream 627347 21836242 ~ 21958354 (+) True G137761
TU173479 lncRNA downstream 332984 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA downstream 333304 22921509 ~ 22922336 (+) False G137951
TU173523 lncRNA downstream 469881 23058086 ~ 23058391 (+) True G137984
TU173550 lncRNA downstream 574786 23162991 ~ 23163619 (+) True G138010
TU173574 lncRNA downstream 687459 23275664 ~ 23275950 (+) True G138034
AMCG00012571 mRNA upstream 130140 22452135 ~ 22455561 (+) True AMCG00012571
AMCG00012570 mRNA upstream 155641 22390202 ~ 22430060 (+) True AMCG00012570
AMCG00012568 mRNA upstream 255955 22320914 ~ 22329746 (+) True AMCG00012568
AMCG00012569 mRNA upstream 265273 22220633 ~ 22320428 (+) True AMCG00012569
AMCG00012567 mRNA upstream 392060 22172285 ~ 22193641 (+) True AMCG00012567
AMCG00012576 mRNA downstream 77276 22665481 ~ 22669344 (+) True AMCG00012576
AMCG00012581 mRNA downstream 271874 22860079 ~ 22862823 (+) True AMCG00012581
AMCG00012579 mRNA downstream 292154 22880359 ~ 22911656 (+) True AMCG00012579
AMCG00012580 mRNA downstream 348065 22936270 ~ 22950900 (+) True AMCG00012580
AMCG00012578 mRNA downstream 372993 22961198 ~ 22966195 (+) True AMCG00012578
TU173418 other upstream 19595 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 627543 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 709159 21854706 ~ 21876542 (+) False G137764
TU173102 other upstream 1269250 21303225 ~ 21316451 (+) True G137644
TU173076 other upstream 1292296 21270360 ~ 21293405 (+) False G137629
TU173473 other downstream 229748 22817953 ~ 22818458 (+) True G137947
TU173480 other downstream 299333 22887538 ~ 22888056 (+) False AMCG00012579
TU173653 other downstream 1121313 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile