RNA id: AMCG00012578


Basic Information

Item Value
RNA id AMCG00012578
length 677
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00012578
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22961198 ~ 22966195 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTATGATAGAAGATGCTCCAATCGAACAAATCCCCACAGTTTCTGTGACCGAAAATGAGAAAACTACATTATATTGCAAGTTTGAAGCATCAAGCAGTGATTATCTCTTTAGGTACATACAGAAAAGCAACAAGGCACCAAAACATATACTTGGACAGTACTCTGGTATTGACCCAGGATTTAAAGGTTTCTCTGCAAATCGCAACAACCAGGAGAATACCTATAATCTGACTAtatctgcagctgtgctgtCGGACTCTTCCACATACTTCTGTGCTCTGAGGCCCACAATATCTTCTGGGCTGAGTGATGGAGATGAGGTGCATCCATGGAAACATGTCCAAACATCTGAGGAGACCCAGGAGACCAGAATCTACTGTAATTACTCTCTGACAAACAATGCAGCCTCCAAATATCTATACTGGTACCAGCAGAAAGCCATGAACAATCCAAGATATATTCTTCAGCTGTACGAAGCAAGCAGTAATGCTAATTTGATTAGATCTGAAGAATTTGATGGGAGATATACAGGACATTTGAATACTTCACCAAGGATCACTTATTTGTCAATCACAAATACACAGTTGTCTGACTCTGCATTTTACTATTGTGCTTTGAGTTCCACAATAATACTGAGCAAAGTGCAGCTGCTCACAAAAACCTCTGAGCATGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173479 lncRNA upstream 38826 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA upstream 38862 22921509 ~ 22922336 (+) False G137951
TU173364 lncRNA upstream 634848 22308413 ~ 22326350 (+) True G137851
TU173330 lncRNA upstream 884328 22075843 ~ 22076870 (+) True G137827
TU173317 lncRNA upstream 955520 22005381 ~ 22005678 (+) True G137814
TU173523 lncRNA downstream 91891 23058086 ~ 23058391 (+) True G137984
TU173550 lncRNA downstream 196796 23162991 ~ 23163619 (+) True G138010
TU173574 lncRNA downstream 309469 23275664 ~ 23275950 (+) True G138034
TU173588 lncRNA downstream 832411 23798606 ~ 23843211 (+) False G138042
TU173617 lncRNA downstream 838432 23804627 ~ 23843211 (+) False G138042
AMCG00012580 mRNA upstream 10298 22936270 ~ 22950900 (+) True AMCG00012580
AMCG00012579 mRNA upstream 49542 22880359 ~ 22911656 (+) True AMCG00012579
AMCG00012581 mRNA upstream 98375 22860079 ~ 22862823 (+) True AMCG00012581
AMCG00012576 mRNA upstream 291854 22665481 ~ 22669344 (+) True AMCG00012576
AMCG00012577 mRNA upstream 372993 22585701 ~ 22588205 (+) True AMCG00012577
AMCG00012583 mRNA downstream 76293 23042488 ~ 23092426 (+) True AMCG00012583
AMCG00012585 mRNA downstream 220692 23186887 ~ 23230915 (+) True AMCG00012585
AMCG00012586 mRNA downstream 451406 23417601 ~ 23422278 (+) True AMCG00012586
AMCG00012588 mRNA downstream 519423 23485618 ~ 23516382 (+) True AMCG00012588
AMCG00012589 mRNA downstream 587865 23554060 ~ 23561816 (+) True AMCG00012589
TU173480 other upstream 73142 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 142740 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 395092 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 1003040 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 1084656 21854706 ~ 21876542 (+) False G137764
TU173653 other downstream 743323 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile