RNA id: AMCG00012579


Basic Information

Item Value
RNA id AMCG00012579
length 1416
RNA type mRNA
GC content 0.40
exon number 7
gene id AMCG00012579
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22880359 ~ 22911656 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCTGACCAAGCTTACAGATGAAGGGGAAAATACTGTTGTGAGATGCAATCATAGCATCACAAACTTTCGGTCTATGTTCTGGTATTTACAGAGACCCGTTAAGGCTCCAGAAAACCTCATTCATGGATATGATTCTGCTCAACCCAATGGACGGTTCTCAATGATATTTGACAGAGACAATCGTGTGACACACCTTTCTATCACAAATACTGAAATAGAAGATGCAGCAACATATTACTGTGCAGTGGAGCCCACAGTGGTACACATTGAGGTTACACTGCTACAAAAACATATTGACGtatttttccacTGGGAATCAAATCTCTCAGAAGGAGGCAACAGTATGGGACAAGTAGCCATACTGCTGATTTTGCCAAAGAGCGATTCTCATCCACTGCAGACAAAAACATTGTACAGTTCTGTCAACACTAATACAAAAACCTTCTGTTATCAGAATGCCACAGAACTGCTCTTCGTTGTCTGGATGTACAAGGAAAAATACAGAGgtATAACACATGGAGACAAAATTGATTCTCAAAACCATGAGGTTTCTGCAGAAGAAGGTTCATCGGTAACATTAAACTGCTCTTATTCATCTACTGATACTGCACCCTATCTCTTCTGGTACCGACAGTTTCCTAACAGTGCTCCACAGTACATGGCAATGAGAGGAGCTGGATCTTCAAGTTCAGTGAAGCAGCAGAGTGATTTATTTACTGATCGTTTCTATTTGAAAGCTGAAAAAGACTCAACAAGTTTTTCAATCACAAGACTGCAAGTCAGTGATTCTGGCACATATCATTGTGCTCTGCAGCCCACAATGAGTCACTGCCAGGgTATAACACATGGAGACAAAATTGATTCTCAAAACCATGAGGTTTCTGCAGAAGAAGGTTCATCAGTAACATTAAACTGCTCTTATTCAACTACTGATCAAGCACCTTCTTTGTTCTGGTACCATCAGTTTCCTAACAGTGCTCCACAATATATGGCAATGAGAGGAGCTGGAACTCTCAGTTCACTGAAGCagcaaagtaatttatttactgAGCGTTTCCAGTCAAAAGCTGAAAAAGACTCAACAAGTTTTTCAATCACAAGATTGAAAATCAGTGATTCTGGCACATACCATTGTGCTCTGCAGCCCACAATGAGTCTCTGCCATGGTgcaactgaacaaaaacatAGTCCAGTTCTGCTGAGTATGACTGAAGGAGCAACAGTGACAATCAACTGCAGTTATATTAATTCTCATGTCAGTGTAATGcaaaatccaaatccaaatccaaacaAACCACCAGAAAATCTAGTGATAATTGTGCTGACAGAGACAATTGATCAGTTCAGTTCATCACTTAACAGAAGTAACAGATCTGGGGTTTTCAACATCAGTGATTCACAGACAGCAGACTGA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173364 lncRNA upstream 554009 22308413 ~ 22326350 (+) True G137851
TU173330 lncRNA upstream 803489 22075843 ~ 22076870 (+) True G137827
TU173317 lncRNA upstream 874681 22005381 ~ 22005678 (+) True G137814
TU173251 lncRNA upstream 922005 21836242 ~ 21958354 (+) True G137761
TU173479 lncRNA downstream 9533 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA downstream 9853 22921509 ~ 22922336 (+) False G137951
TU173523 lncRNA downstream 146430 23058086 ~ 23058391 (+) True G137984
TU173550 lncRNA downstream 251335 23162991 ~ 23163619 (+) True G138010
TU173574 lncRNA downstream 364008 23275664 ~ 23275950 (+) True G138034
AMCG00012581 mRNA upstream 17536 22860079 ~ 22862823 (+) True AMCG00012581
AMCG00012576 mRNA upstream 211015 22665481 ~ 22669344 (+) True AMCG00012576
AMCG00012577 mRNA upstream 292154 22585701 ~ 22588205 (+) True AMCG00012577
AMCG00012571 mRNA upstream 424798 22452135 ~ 22455561 (+) True AMCG00012571
AMCG00012570 mRNA upstream 450299 22390202 ~ 22430060 (+) True AMCG00012570
AMCG00012580 mRNA downstream 24614 22936270 ~ 22950900 (+) True AMCG00012580
AMCG00012578 mRNA downstream 49542 22961198 ~ 22966195 (+) True AMCG00012578
AMCG00012583 mRNA downstream 130832 23042488 ~ 23092426 (+) True AMCG00012583
AMCG00012585 mRNA downstream 275231 23186887 ~ 23230915 (+) True AMCG00012585
AMCG00012586 mRNA downstream 505945 23417601 ~ 23422278 (+) True AMCG00012586
TU173473 other upstream 61901 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 314253 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 922201 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 1003817 21854706 ~ 21876542 (+) False G137764
TU173102 other upstream 1563908 21303225 ~ 21316451 (+) True G137644
TU173653 other downstream 797862 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile