RNA id: AMCG00012580



Basic Information


Item Value
RNA id AMCG00012580
length 566
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00012580
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 22936270 ~ 22950900 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gTATGATAGAAGGAGCTCCAATTGAACAAACCCCCACAGTTTTTGTGACTGAAAATGAGAAAACTACATTATATTGCAAGTTTGAGGCATCAAGCAACGATTATCTCTTTTGGTACATACAGAAAAGCAATGAGGCACCAAAACATATACTAGGAGAATTAACTGGTATGATAGATGGAGCTCCAATTGAACAAACACCCACAGTTTTTGTGTCCGAAAATGAGAAAACTACATTATATTGCAAGTTTGAGGCATCAGGCACCATTTATCTATTTTGGTACATACAGAAAAGCAATGAGGCACCAAAACATATACTTGGAGAATACAGTATTGATACAGGATTTAAAGACCGATTCTCTGCAAATCGCAACAACCAGGACAATACCTATAATCTGACTAtatctgcagctgtgctgtCTGACTCTTCCACATACTTCTGTGCTCTGAGGCCCACAATAGCGGAGGACACTGTGAGCCAGAGCCCAGTTAATCTGAATGTGATTGAAGGACAACCTGTTGAACTCAGTTGTGTGTACAGCACTAGTGATACTTCACCAGATCTATTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU173479 lncRNA upstream 13898 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA upstream 13934 22921509 ~ 22922336 (+) False G137951
TU173364 lncRNA upstream 609920 22308413 ~ 22326350 (+) True G137851
TU173330 lncRNA upstream 859400 22075843 ~ 22076870 (+) True G137827
TU173317 lncRNA upstream 930592 22005381 ~ 22005678 (+) True G137814
TU173523 lncRNA downstream 107186 23058086 ~ 23058391 (+) True G137984
TU173550 lncRNA downstream 212091 23162991 ~ 23163619 (+) True G138010
TU173574 lncRNA downstream 324764 23275664 ~ 23275950 (+) True G138034
TU173588 lncRNA downstream 847706 23798606 ~ 23843211 (+) False G138042
TU173617 lncRNA downstream 853727 23804627 ~ 23843211 (+) False G138042
AMCG00012579 mRNA upstream 24614 22880359 ~ 22911656 (+) True AMCG00012579
AMCG00012581 mRNA upstream 73447 22860079 ~ 22862823 (+) True AMCG00012581
AMCG00012576 mRNA upstream 266926 22665481 ~ 22669344 (+) True AMCG00012576
AMCG00012577 mRNA upstream 348065 22585701 ~ 22588205 (+) True AMCG00012577
AMCG00012571 mRNA upstream 480709 22452135 ~ 22455561 (+) True AMCG00012571
AMCG00012578 mRNA downstream 10298 22961198 ~ 22966195 (+) True AMCG00012578
AMCG00012583 mRNA downstream 91588 23042488 ~ 23092426 (+) True AMCG00012583
AMCG00012585 mRNA downstream 235987 23186887 ~ 23230915 (+) True AMCG00012585
AMCG00012586 mRNA downstream 466701 23417601 ~ 23422278 (+) True AMCG00012586
AMCG00012588 mRNA downstream 534718 23485618 ~ 23516382 (+) True AMCG00012588
TU173480 other upstream 48214 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 117812 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 370164 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 978112 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 1059728 21854706 ~ 21876542 (+) False G137764
TU173653 other downstream 758618 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile