RNA id: AMCG00012583


Basic Information

Item Value
RNA id AMCG00012583
length 719
RNA type mRNA
GC content 0.45
exon number 4
gene id AMCG00012583
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 23042488 ~ 23092426 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATATTAGCTGTGAAGCACAGCTGACCCAGTTTCCAGAAATGCTGACTGTGACTGAAGGAGTAACTGTGACAATCAACTGCAGTTATATTGGGTCTAGTGTCAGTGTAATGCAATGGTACAGACAGAATCCAAACAAACCACCAGAGAAACTAGTGATAACAGCCAGACCGACAGAGACAATTAATCATTTCAGTTCATCACTTATCAGAAgtATAACACATGGAGACAAAATTGATTCTCAAAACCATGAGGTTTCTGCAGAAGAAGGTTCATCGGTAACATTCAACTGCTCTTATTCAACTACTTATACTGCACCCTATCTCTTCTGGTACCGACAGTTTCCTAACAGTGCCCCACAGTACATGGCAATGAGAGGAGCTGGATCTTCAAGTTCAGTGAAGCAGCAGAGTGATTTATTTACTGATCGTTTCCATTCGAAAGCTGAAAAAGACACGACAAGTTTTACAATCACAAGACTGAAAGTCAGCGATTCTGGCACATATCATTGTGCTCTGCAGCCCACAATGAGTCACTGCCAGGGCATGAGCAAAAGCACCCATGAGCCCATCAACACCCTGTGGTCTGAGACAGCTGAGAGGGTCCAACACTCTGCTGCTAGGCGCCGTGTTGTGGTCATAGAAGTGACCAAACTCCCTCAGAATCTCATCACAGCATTTCTCTTCAATGCGGCCAGTTTCCACAAGGAGATGCAGAACAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173479 lncRNA upstream 120116 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA upstream 120152 22921509 ~ 22922336 (+) False G137951
TU173364 lncRNA upstream 716138 22308413 ~ 22326350 (+) True G137851
TU173330 lncRNA upstream 965618 22075843 ~ 22076870 (+) True G137827
TU173317 lncRNA upstream 1036810 22005381 ~ 22005678 (+) True G137814
TU173550 lncRNA downstream 70565 23162991 ~ 23163619 (+) True G138010
TU173574 lncRNA downstream 183238 23275664 ~ 23275950 (+) True G138034
TU173588 lncRNA downstream 706180 23798606 ~ 23843211 (+) False G138042
TU173617 lncRNA downstream 712201 23804627 ~ 23843211 (+) False G138042
TU173613 lncRNA downstream 714239 23806665 ~ 23843211 (+) True G138042
AMCG00012578 mRNA upstream 76293 22961198 ~ 22966195 (+) True AMCG00012578
AMCG00012580 mRNA upstream 91588 22936270 ~ 22950900 (+) True AMCG00012580
AMCG00012579 mRNA upstream 130832 22880359 ~ 22911656 (+) True AMCG00012579
AMCG00012581 mRNA upstream 179665 22860079 ~ 22862823 (+) True AMCG00012581
AMCG00012576 mRNA upstream 373144 22665481 ~ 22669344 (+) True AMCG00012576
AMCG00012585 mRNA downstream 94461 23186887 ~ 23230915 (+) True AMCG00012585
AMCG00012586 mRNA downstream 325175 23417601 ~ 23422278 (+) True AMCG00012586
AMCG00012588 mRNA downstream 393192 23485618 ~ 23516382 (+) True AMCG00012588
AMCG00012589 mRNA downstream 461634 23554060 ~ 23561816 (+) True AMCG00012589
AMCG00012591 mRNA downstream 536034 23628460 ~ 23649841 (+) True AMCG00012591
TU173480 other upstream 154432 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 224030 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 476382 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 1084330 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 1165946 21854706 ~ 21876542 (+) False G137764
TU173653 other downstream 617092 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile