RNA id: AMCG00012585


Basic Information

Item Value
RNA id AMCG00012585
length 546
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00012585
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 23186887 ~ 23230915 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGTGAGgacgatgatgatgacgatgaaaGTCATCCAACACATCAAACACCCCCGCCAAATAATGAGGCTCAGCTACCTCAACCCAGATGgtATAACACATGGAGACAAAATTGATTCTCAAAACCATGAGGTTTCCGCAGAAGAAGGTTCATCGcctaaTCTGGAGGAGGAAAAGGAATCTCTTGATTCTCTCGAGCCCGAGCCAATGTCAACCGGCCAACATAACCACCCTTACGAACCCGCCACTAATGAGACCCCGGCGTCAACGTCAGGTGTCACAGGAGTCCCGCCATCAGACCTGTCATCATTGGACAAGCCACCCACGAAACCAAAACCGCAAAGATTTCCAGTGACTACAATCTTGGGAAAGCTGTTTTTCCTGAAGCTGATGGCTGACAGGGATGCCCGGGAGCGTGGGCACATGGCGTATTTCCGGATACACATATCCCAAATAGCAGCAACCAGTGAAATTTACAGGGAGTATCCAATAAGCCCTGAGGCCACAAATCCAGTATGTTACGTGAGCCGAGAACTCCAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173550 lncRNA upstream 23268 23162991 ~ 23163619 (+) True G138010
TU173523 lncRNA upstream 128496 23058086 ~ 23058391 (+) True G137984
TU173479 lncRNA upstream 264515 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA upstream 264551 22921509 ~ 22922336 (+) False G137951
TU173364 lncRNA upstream 860537 22308413 ~ 22326350 (+) True G137851
TU173574 lncRNA downstream 44749 23275664 ~ 23275950 (+) True G138034
TU173588 lncRNA downstream 567691 23798606 ~ 23843211 (+) False G138042
TU173617 lncRNA downstream 573712 23804627 ~ 23843211 (+) False G138042
TU173613 lncRNA downstream 575750 23806665 ~ 23843211 (+) True G138042
TU173596 lncRNA downstream 590140 23821055 ~ 23843211 (+) False G138042
AMCG00012583 mRNA upstream 94461 23042488 ~ 23092426 (+) True AMCG00012583
AMCG00012578 mRNA upstream 220692 22961198 ~ 22966195 (+) True AMCG00012578
AMCG00012580 mRNA upstream 235987 22936270 ~ 22950900 (+) True AMCG00012580
AMCG00012579 mRNA upstream 275231 22880359 ~ 22911656 (+) True AMCG00012579
AMCG00012581 mRNA upstream 324064 22860079 ~ 22862823 (+) True AMCG00012581
AMCG00012586 mRNA downstream 186686 23417601 ~ 23422278 (+) True AMCG00012586
AMCG00012588 mRNA downstream 254703 23485618 ~ 23516382 (+) True AMCG00012588
AMCG00012589 mRNA downstream 323145 23554060 ~ 23561816 (+) True AMCG00012589
AMCG00012591 mRNA downstream 397545 23628460 ~ 23649841 (+) True AMCG00012591
AMCG00012592 mRNA downstream 432313 23663228 ~ 23689541 (+) True AMCG00012592
TU173480 other upstream 298831 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 368429 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 620781 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 1228729 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 1310345 21854706 ~ 21876542 (+) False G137764
TU173653 other downstream 478603 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile