RNA id: AMCG00012586


Basic Information

Item Value
RNA id AMCG00012586
length 357
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00012586
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 23417601 ~ 23422278 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAAGTAATTTCTCTGACTCTCAGGTATTTCAGGATCAAAGCATTGCCATCTCTGAGGGTGGCAACACAGAACTGTTATGCAGTCAAAATATTACCACTGACGACCCATTGTTTTGGTATATACAGCGACCGAATCAATCACCGCAGATTCTAGTTCATTCGTATAATAAAAAAGTTGTAATTGCACGTTTCACAATGGAGATAAGCGacaaaggaaggaaaacaaCACTTGCAATACAGAAGGTTGATTTGAGAGACAGTGCTTCTTACATCTGTGCAGTGAGGCCCACAGCTGTTCAATACCAATGCAGGCTGAACAAAAACCTTAGAAAGGACCCAACTCTGGTACTGTAG

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173574 lncRNA upstream 141651 23275664 ~ 23275950 (+) True G138034
TU173550 lncRNA upstream 253982 23162991 ~ 23163619 (+) True G138010
TU173523 lncRNA upstream 359210 23058086 ~ 23058391 (+) True G137984
TU173479 lncRNA upstream 495229 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA upstream 495265 22921509 ~ 22922336 (+) False G137951
TU173588 lncRNA downstream 376328 23798606 ~ 23843211 (+) False G138042
TU173617 lncRNA downstream 382349 23804627 ~ 23843211 (+) False G138042
TU173613 lncRNA downstream 384387 23806665 ~ 23843211 (+) True G138042
TU173596 lncRNA downstream 398777 23821055 ~ 23843211 (+) False G138042
TU173612 lncRNA downstream 407376 23829654 ~ 23843211 (+) False G138042
AMCG00012585 mRNA upstream 186686 23186887 ~ 23230915 (+) True AMCG00012585
AMCG00012583 mRNA upstream 325175 23042488 ~ 23092426 (+) True AMCG00012583
AMCG00012578 mRNA upstream 451406 22961198 ~ 22966195 (+) True AMCG00012578
AMCG00012580 mRNA upstream 466701 22936270 ~ 22950900 (+) True AMCG00012580
AMCG00012579 mRNA upstream 505945 22880359 ~ 22911656 (+) True AMCG00012579
AMCG00012588 mRNA downstream 63340 23485618 ~ 23516382 (+) True AMCG00012588
AMCG00012589 mRNA downstream 131782 23554060 ~ 23561816 (+) True AMCG00012589
AMCG00012591 mRNA downstream 206182 23628460 ~ 23649841 (+) True AMCG00012591
AMCG00012592 mRNA downstream 240950 23663228 ~ 23689541 (+) True AMCG00012592
AMCG00012593 mRNA downstream 275146 23697424 ~ 23710070 (+) True AMCG00012593
TU173480 other upstream 529545 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 599143 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 851495 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 1459443 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 1541059 21854706 ~ 21876542 (+) False G137764
TU173653 other downstream 287240 23709518 ~ 23742591 (+) False AMCG00012593

Expression Profile