RNA id: AMCG00012593


Basic Information

Item Value
RNA id AMCG00012593
length 1143
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00012593
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 23697424 ~ 23742591 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGTCACTGGGAACTCTGTTTCACAGCCTGCGGAGACTGTAATTGAGGAACGGAATACTATTCAAATTCAATGCAAATATACAACGAATAtctcacagtttgccattgacTGGTATAGATATGATGCCTATCGTGCACCTCAGTTTCTTATTCGGAAGTATTGGAATAATAATGAATGGAAAGCAGACAGTTTAGACCCACGTTTCACAATAAAGTTGAATACTCAACTCACATCCACAATGCTAAATATTGCAAACGCAAGACTGTCGGATGCAAGCACTTATTTTTGTACCATCAGTGACTCACAGTGTCGAGCCTCAATGATTGATGCTGCAGTTGTACCCCTCATGACTGATGATGATCTTGCCAAATACATTCCCTCTGATGatgTGAAATCGGATTCAGTAATCAACCAAACTCCTCCATCTACCAGCGTATTTGAACTTGAGGCTGTTACTTTCCATTGTAACCTGAAAAACGGACCAATGAGCAACCACTATATGTTTTGGTACAGACAAAGTCAGAAGCAGTCTCTCGATTTAGTTTACTCAGAAGACGGGAACATATATGGAAAAGCATTTCGACAAAGATTCATCGCAAATGTGGAGAGCTCAGGGAACAAATTTTCCTTGCAGATCAAAAGCGTTGTGTTGGAAGACAGCGCCCTTTACTTTTGCGGAGCTCGACCACATACTCGTGTGTTTCTCTTGACTCCTGATTCCCTCATGGCTCATGCAAGTTTCCACACTCGACATTCCAGCTCCATGACCTTCAACTTCAAGGCTTCAAGGATCACAAGTCCTGACGTGGTAGGTGTGGAATCGAATCCAAACATCATCCAGACTCCTCCAACCGCCAACCTTGGAGAACGTGAAAGTGTAACTTTCCATTGTAACCTAGAAGATGGGGAAATGGGCAGTTATTATATGTATTGGTACAGACAGCATCAGAGTCGGGCTCCCGAATTCATATACAGAGAAGGCGATCACTATGGGCAAGGATTTGGAGAGAGGTTCGTGGCAAAACTTGAGAGCTCAAACAACAAGTTCTCACTGCATATTAAAAACGCTCTGATCGAAGACAGTGCGATATACTATTGCGCTGCCAGAGCACTGTGTCTGAATTACTGGGGGCTACAATAC

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173574 lncRNA upstream 421474 23275664 ~ 23275950 (+) True G138034
TU173550 lncRNA upstream 533805 23162991 ~ 23163619 (+) True G138010
TU173523 lncRNA upstream 639033 23058086 ~ 23058391 (+) True G137984
TU173479 lncRNA upstream 775052 22921189 ~ 22922372 (+) True G137951
TU173588 lncRNA downstream 88536 23798606 ~ 23843211 (+) False G138042
TU173617 lncRNA downstream 94557 23804627 ~ 23843211 (+) False G138042
TU173613 lncRNA downstream 96595 23806665 ~ 23843211 (+) True G138042
TU173596 lncRNA downstream 110985 23821055 ~ 23843211 (+) False G138042
TU173612 lncRNA downstream 119584 23829654 ~ 23843211 (+) False G138042
AMCG00012592 mRNA upstream 7883 23663228 ~ 23689541 (+) True AMCG00012592
AMCG00012591 mRNA upstream 47583 23628460 ~ 23649841 (+) True AMCG00012591
AMCG00012589 mRNA upstream 135608 23554060 ~ 23561816 (+) True AMCG00012589
AMCG00012588 mRNA upstream 181042 23485618 ~ 23516382 (+) True AMCG00012588
AMCG00012586 mRNA upstream 275146 23417601 ~ 23422278 (+) True AMCG00012586
AMCG00012595 mRNA downstream 149759 23859829 ~ 23899337 (+) True AMCG00012595
AMCG00012596 mRNA downstream 242122 23952192 ~ 23976569 (+) True AMCG00012596
AMCG00012599 mRNA downstream 333885 24043955 ~ 24069451 (+) True AMCG00012599
AMCG00012598 mRNA downstream 506297 24216367 ~ 24222350 (+) True AMCG00012598
TU173480 other upstream 809368 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 878966 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 1131318 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 1739266 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 1820882 21854706 ~ 21876542 (+) False G137764

Expression Profile