RNA id: TU173653


Basic Information

Item Value
RNA id TU173653
length 469
RNA type TUCP
GC content 0.42
exon number 3
gene id AMCG00012593
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 23697424 ~ 23742591 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaGCGGAAGAGCAgtactttttcttctttaaactgCAACACATGAACTGAGGAAGAAACATGCATCTACTTCTGATGTTTATAGCAGTATTCCAGTGTAATGAATTagGTGTGGAATCGAATCCAAACATCATCCAGACTCCTCCAACCGCCAACCTTGGAGAACGTGAAAGTGTAACTTTCCATTGTAACCTAGAAGATGGGGAAATGGGCAGTTATTATATGTATTGGTACAGACAGCATCAGAGTCGGGCTCCCGAATTCATATACAGAGAAGGCGATCACTATGGGCAAGGATTTGGAGAGAGGTTCGTGGCAAAACTTGAGAGCTCAAACAACAAGTTCTCACTGCATATTAAAAACGCTCTGATCGAAGACAGTGCGATATACTATTGCGCTGCCAGGGTATACGGTGACACCCTACCGTTAATTTTTGGAAAAGGGATCGCATTATACATAAATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173574 lncRNA upstream 433568 23275664 ~ 23275950 (+) True G138034
TU173550 lncRNA upstream 545899 23162991 ~ 23163619 (+) True G138010
TU173523 lncRNA upstream 651127 23058086 ~ 23058391 (+) True G137984
TU173479 lncRNA upstream 787146 22921189 ~ 22922372 (+) True G137951
TU173477 lncRNA upstream 787182 22921509 ~ 22922336 (+) False G137951
TU173588 lncRNA downstream 56015 23798606 ~ 23843211 (+) False G138042
TU173617 lncRNA downstream 62036 23804627 ~ 23843211 (+) False G138042
TU173613 lncRNA downstream 64074 23806665 ~ 23843211 (+) True G138042
TU173596 lncRNA downstream 78464 23821055 ~ 23843211 (+) False G138042
TU173612 lncRNA downstream 87063 23829654 ~ 23843211 (+) False G138042
AMCG00012592 mRNA upstream 19977 23663228 ~ 23689541 (+) True AMCG00012592
AMCG00012591 mRNA upstream 59677 23628460 ~ 23649841 (+) True AMCG00012591
AMCG00012589 mRNA upstream 147702 23554060 ~ 23561816 (+) True AMCG00012589
AMCG00012588 mRNA upstream 193136 23485618 ~ 23516382 (+) True AMCG00012588
AMCG00012586 mRNA upstream 287240 23417601 ~ 23422278 (+) True AMCG00012586
AMCG00012595 mRNA downstream 117238 23859829 ~ 23899337 (+) True AMCG00012595
AMCG00012596 mRNA downstream 209601 23952192 ~ 23976569 (+) True AMCG00012596
AMCG00012599 mRNA downstream 301364 24043955 ~ 24069451 (+) True AMCG00012599
AMCG00012598 mRNA downstream 473776 24216367 ~ 24222350 (+) True AMCG00012598
TU173480 other upstream 821462 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 891060 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 1143412 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 1751360 21932295 ~ 21958158 (+) True G137775
TU173256 other upstream 1832976 21854706 ~ 21876542 (+) False G137764

Expression Profile