RNA id: AMCG00012595


Basic Information

Item Value
RNA id AMCG00012595
length 3556
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00012595
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 23859829 ~ 23899337 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATGAAGAAAAGCTGGGAACAACAGGCATCTTTCACATAGAACATACAGGGGAGttggagggagaggaagagataGTGCAGGAGAGAATTCAGTCTGAAAGGAGTGAGCTGGAAGAAGTAGAGGGAGAGCAGGAAGATGAAGCTGAGATAGAGGGAGGTGAAGATAaggcagagggagagattgAAGTGCAGCAGAGTGAGGATGAGGGCATCAAGGGCGCACTTGACAGAAGTCCTCACAGAGCAGTAGAAGAAGACCTTTCTCGACCTGTGGAAACTACTTTGAGTGACCCTGAGAGAGTGTTGGTTCACATACAGTTGACATAGTGAAGACAAACTGGAACTTACTGAGCAGCACAGGAACGTTCAAAATAGGATATTATTGATCACCAGGAAGAGCCAGAGACGGGATACACCATGATCTGTAAATGTTACAAAGGGActcaatatatacaaatctgATCCTGCCAAGACTCTGTACACTACTGATTTCACAGaatagacttttttttgttccattcTAGAAGGGTTTGCCGATGGAGATGGAACATTCTTAAATACAATCTGAACTTGACATAGATGGACTGAAATAAATCTGCTCTGGTGTGTAACCAAATTTTACAAGACATGAGTGAACTAGATGTAATAAAATCAGAAGAGGACTTTCACCCTGTTGACACTGAAGTTCAGTGCTCTGATGAAATAAAGATTGAGCCCATGCTAGGCCCTGATCACATGAAATCTGATACATGTGCAAGCGAGGTCGTTACTGTTTCGCATGTGGGAATGAAGGAATCTAAAGAAAGTGATGTTGGACTTTGTCAGAGTGCAGTGAAAGCTTCCACATCACTCACTCCGCAACCTCCAGGACCCTCTTACACACTCACTCCCACTTCATTGCTTGTGAGTGCCAATACAGCAGTGTCTGCTTTACACACGCAGACATGCCAATCAATTATAGTGCCCCAAAATCCATTCCTCCTGCTCAAATATCAAGGAGATGGTACATACCACTTTACCCCCAGTGGGAGTGCAACACACCAACTGACTGACATGTTAAGTACACTTAAAAACCATCAAGAAATTAACTCGGATGTGAGGCCGTACAGCTGTCGACAGTGTGGGGAGGCTTTCAGTCAGGAAACGGGACTTAAATCTCATGAGCGAACTCACACTGGATGGAGAACACATTGCTGTTCCTATTGTGAGAAGACATTCCGTCGTACAGACAGTCTTAAAGTTCATGAGCggattcacacaggagagagaccattcaGCTGTAGTGAATGTTCTAAGACTTTTAGGGATTCTAAAAGTCTTAAGTCACATGAGCTTATCCATACAGGAGAAACTCCGCACCAGTGCTCCCAGTGTGGAAAGTCTTTCAGTGCAGcaaataatcttaaaatacaCATGCAAGTTCACACAGATGTAAGACCATTCTGCTGTTCCCAGTGTGGCATTGCTTTCAAATTTTCATCAAAGCTTAAAAGACATCAACTTATTCATACTGGAGAGAAACCATTCAGCTGCTCCCATTGTGGAATGAGTTTTCAAAGATCAAGTGGccttaaaaaacacagactGGTTCATGCGGAAGATGGAAGCTACGGCTGCTTCCAGTGTGGGGAGACTTTCAGTGATTTAAGTAGTCTTACAAGCCACAAGACAATTCACATAGGAGAGGCACAACCGTATTGCTGCTCCCACTGTGGGAGAACCTTCAAAACAACAGTAACTCTTAAAAACCATGAGCaaactcacacaggagagaaaccacaTGGCTGCCACCATTGTGGGAAGACTTTCAACAGGTTAGATCATCTTAAAGCACATGAAAGAGTTCATACAGGGGAGAAACCATACTGCTGCCACCAGTGTGGGAAGACTTTTGTTCAGTCAGGAGGTCTTAAAGAACATGAGAGAGTTCATACAGGGGAGAAACCATTCTCGTGTTCCGTGTGTGGGAAATCTTTCCGTCATTCACGTACTTTCCAAATACACAAGAATACTCACACCGGAGAAAAGCCATACTCTTGCTTCCAATGTGGAAAGACGTTCGGTGATCATGGATCTCGTAAACGACATGAGcgaattcacacaggagagaaaccattcTGTTGCCCCCCATGTGGGAAGGCTTTCAAGACAACAGCGGAACTTAGAATACACCAATTAATTCACTCAGGAGATAGACCATACAGTTGCTCTCAGTGTGGGAAGACTTTTAGTTTGGAAACGCGTCTTAAAACACATCAGAGACGGCACAAAAAACCATAATAAATGTACTACTTTCACTATGAGAAAAGTTCCAAACTATAGTTTCACTGTCAAAAATGTATGAGATCCACACACCACAGAAACTGTACTTTTAACTGTGGAATAAATCTTGAAGAACATGGGACAATTCATACAGCAGAAAGACCCCAGTGTTTCAACTTGTgtttaaagaatgaaagaatgTCAGTGAGGTAGAAAACTTTTGTAAAAGCCAAAATGTCATTGTCTGAGGATACAACACTTCCACTGGTCACTAATACAGGATTGATGATTTTTATCCATGATTTGAATGTCTTCTGAAGGGCTAGATTAACCATCATAAGAGCGGGAGGGCATTTAGAATGAGTCATTCCCCActttttacattgattttgaGCACCAGAGTGTCATAACAGTCAAAGTCTCTGCATGCTACATTATTACAGGAGAGCGAACAGGTCTCATATCTCACCCCTGCCATTGTTGACGTTGGGCGGGACCTCTTAGTGAGGCACAAACTTAGTGCCACTGAGGGAGGGTGGATACAAGCCACTGATTCATGTGATAGACTGGCAGCTGACATGAAGGGCTTCTATTGCTTTGTCTCTTCTTTCCTAAGGAAGCATGGGGGTTGTAGTGGTGAACCAAGTTGAATATTTCACAAGTGGGGAAAAATAATTGGAGAATCTATTAAATTATAAAGCAAGAAATGTATGTTGGCTTTTACATTTCATGAAGAAAAACTTAAATTTGAGTGGTGCATATCAtttcaaattagatttttgaagtaaaaatgtaatattagccaaataaaattcagtttttttttttcttaattaccTTTTTGTTGAGGAATTTAGGATTTGGGTGAGAGAGCAGGAAGAAAGTCTATTATTTGggattagggagcagacacGAATGAGATAATGGCTGaagaaacaaactttttttataCATGCTTGGACTTGCATTTGAATTATGATTTGGGTGGGTATGTCCATTTcttaaggttttgttttcagatggGAACCTGTCAATAAGTATAATTGGGCTCAAAAAGGagccagttttattttgttttttatttcactacCCTCATGAAGTAATAAATCACTTCCTTTGCACCATATTTCTCGACTGTTTATGTCTGTCTTCCAAGATCCTCCCTAATTATGGAGCCCAGCCCTGTGGCCATCCCACAGTCACActgtattgaaaatgtgtaatatggGGATGCGTTTCCAGTCCTGACAACTTACAATTTCATACTGtaataaactattttaacatAAAA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173588 lncRNA upstream 16618 23798606 ~ 23843211 (+) False G138042
TU173617 lncRNA upstream 16618 23804627 ~ 23843211 (+) False G138042
TU173613 lncRNA upstream 16618 23806665 ~ 23843211 (+) True G138042
TU173596 lncRNA upstream 16618 23821055 ~ 23843211 (+) False G138042
TU173612 lncRNA upstream 16618 23829654 ~ 23843211 (+) False G138042
TU173721 lncRNA downstream 20739 23920076 ~ 23921869 (+) True G138118
TU173839 lncRNA downstream 337325 24236662 ~ 24236977 (+) True G138209
TU173842 lncRNA downstream 341802 24241139 ~ 24241424 (+) True G138212
AMCG00012593 mRNA upstream 149759 23697424 ~ 23710070 (+) True AMCG00012593
AMCG00012592 mRNA upstream 170288 23663228 ~ 23689541 (+) True AMCG00012592
AMCG00012591 mRNA upstream 209988 23628460 ~ 23649841 (+) True AMCG00012591
AMCG00012589 mRNA upstream 298013 23554060 ~ 23561816 (+) True AMCG00012589
AMCG00012588 mRNA upstream 343447 23485618 ~ 23516382 (+) True AMCG00012588
AMCG00012596 mRNA downstream 52855 23952192 ~ 23976569 (+) True AMCG00012596
AMCG00012599 mRNA downstream 144618 24043955 ~ 24069451 (+) True AMCG00012599
AMCG00012598 mRNA downstream 317030 24216367 ~ 24222350 (+) True AMCG00012598
TU173653 other upstream 117238 23709518 ~ 23742591 (+) False AMCG00012593
TU173480 other upstream 971773 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 1041371 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 1293723 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 1901671 21932295 ~ 21958158 (+) True G137775

Expression Profile