RNA id: AMCG00012596


Basic Information

Item Value
RNA id AMCG00012596
length 429
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00012596
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 23952192 ~ 23976569 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAACGCCTGCATCGGCCAGTGGAGCGGTGGTGATGTCAGGGTGTCACAACGGGGTGCAGGAAAAGTTCAGAAAAGAGGTCACCAAATTCGCTTCAGACCAGCTGCAGTCACCCAAACTGGACATCTCATCAGCAAATTATTTGATCCAATCTGTCATCACAGCACTAACCAAAAAACGTTCGGAGGAATGTTGGAGCGACATACAAAATCGTGCAAAGGAACTCAAAGACAATATCATGGCTCTTGTGATTCTCCAAGGCACACAGGCTGCAGATCCAGGTCTGGTCAGTCTCACAGAACTCCAGAGCTCGGCGGTGCTGCTGGCACAGTCTGTGCTCCAGCCAGGCTACCGTGAAGCAATAACCCGTGACTTCACCAATATCGCACTGCAGGGTGACGTTGCTGCCGACCTCCGCCACCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173721 lncRNA upstream 30323 23920076 ~ 23921869 (+) True G138118
TU173588 lncRNA upstream 108981 23798606 ~ 23843211 (+) False G138042
TU173839 lncRNA downstream 260093 24236662 ~ 24236977 (+) True G138209
TU173842 lncRNA downstream 264570 24241139 ~ 24241424 (+) True G138212
AMCG00012595 mRNA upstream 52855 23859829 ~ 23899337 (+) True AMCG00012595
AMCG00012593 mRNA upstream 242122 23697424 ~ 23710070 (+) True AMCG00012593
AMCG00012592 mRNA upstream 262651 23663228 ~ 23689541 (+) True AMCG00012592
AMCG00012591 mRNA upstream 302351 23628460 ~ 23649841 (+) True AMCG00012591
AMCG00012589 mRNA upstream 390376 23554060 ~ 23561816 (+) True AMCG00012589
AMCG00012599 mRNA downstream 67386 24043955 ~ 24069451 (+) True AMCG00012599
AMCG00012598 mRNA downstream 239798 24216367 ~ 24222350 (+) True AMCG00012598
TU173653 other upstream 209601 23709518 ~ 23742591 (+) False AMCG00012593
TU173480 other upstream 1064136 22887538 ~ 22888056 (+) False AMCG00012579
TU173473 other upstream 1133734 22817953 ~ 22818458 (+) True G137947
TU173418 other upstream 1386086 22565424 ~ 22566106 (+) True G137899
TU173274 other upstream 1994034 21932295 ~ 21958158 (+) True G137775

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01084211_00000160_00000525.mRNA True 476 mRNA 0.44 1 CI01084211 160 ~ 635 (+)