RNA id: TU164778


Basic Information

Item Value
RNA id TU164778
length 375
lncRNA type inter_gene
GC content 0.61
exon number 2
gene id G131428
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 550039 ~ 560333 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgcatttCCACGAACTCCGGGTTCAGAGAGGCTCGCCCTGCACATGTGAGGGGACACGACACACGTgagctgtagaggccagcgctctccctgactctggggaaagggctcccactgagcagcagcactgggagcaggagtggggctccagtctgaggcaggacacagagcccacagctacTGAAGACACCCAGGGGCTGAGTGAGCAGCCcaggagcagacagagtgaggagCAGCTGAGGGGACAGGAGTCTGGCCACATGGCAGAGCCACACACTGAGGGGTCAACACAGGGACTCGAGGCACTGGCATCTGACACCACAGGGTCAAAGGTCATGTCAAAGGTAATAAAGAGCGACCCTGAGCTGGACTGCA

Function

GO:

id name namespace
GO:0006950 response to stress biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164765 lncRNA downstream 87342 461410 ~ 462697 (-) True G131426
TU164469 lncRNA downstream 189436 360230 ~ 360603 (-) True G131244
TU164408 lncRNA downstream 337477 170453 ~ 212562 (-) False AMCG00011579
TU164344 lncRNA downstream 452210 96783 ~ 97829 (-) True G131152
TU164340 lncRNA downstream 484810 64893 ~ 65229 (-) True G131149
TU164788 lncRNA upstream 66998 627331 ~ 630425 (-) True G131437
TU164818 lncRNA upstream 105044 665377 ~ 666287 (-) True G131456
TU164823 lncRNA upstream 133599 693932 ~ 698388 (-) True G131460
TU164846 lncRNA upstream 213844 774177 ~ 837898 (-) False G131471
TU164842 lncRNA upstream 274344 834677 ~ 837898 (-) False G131471
AMCG00011590 mRNA downstream 175849 373364 ~ 374190 (-) True AMCG00011590
AMCG00011588 mRNA downstream 229411 314019 ~ 320628 (-) True AMCG00011588
AMCG00011589 mRNA downstream 246221 293452 ~ 303818 (-) True AMCG00011589
AMCG00011584 mRNA downstream 267898 280931 ~ 282141 (-) True AMCG00011584
AMCG00011582 mRNA downstream 281985 262391 ~ 268054 (-) True AMCG00011582
AMCG00011594 mRNA upstream 52807 613140 ~ 619539 (-) True AMCG00011594
AMCG00011595 mRNA upstream 95087 655420 ~ 656305 (-) True AMCG00011595
AMCG00011599 mRNA upstream 126798 687131 ~ 691008 (-) True AMCG00011599
AMCG00011597 mRNA upstream 139485 699818 ~ 720407 (-) True AMCG00011597
AMCG00011598 mRNA upstream 162751 723084 ~ 731850 (-) True AMCG00011598
TU164750 other downstream 134885 414517 ~ 415154 (-) True G131420
TU164448 other downstream 246124 302684 ~ 303915 (-) False AMCG00011589
TU164816 other upstream 105044 665377 ~ 667310 (-) False G131456
TU164834 other upstream 152815 713148 ~ 720282 (-) False AMCG00011597
TU164850 other upstream 229686 790019 ~ 796419 (-) False AMCG00011601
TU165094 other upstream 1147384 1707717 ~ 1719226 (-) True AMCG00011645
TU165095 other upstream 1147384 1707717 ~ 1719226 (-) False AMCG00011645

Expression Profile