RNA id: TU164823


Basic Information

Item Value
RNA id TU164823
length 4004
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G131460
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 693932 ~ 698388 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGGAGTGAGGAGCGTTtatttgattggtttatttgtttatcacacacacacacacacaaacccaaacCCCATTCCTGCAAACTACACAcaggtgcagagagagagagagactgatacAGACACACTATCATAAACAACTACACAATTATGTACAGTTTGGTCTTAAATGGGATGGTAAAGCAGGGAATCCACCCAGAAGCATCACAATCAAAACACGGTGTTATAAAatatcatgtgtgtgtgtctgcatccGTGTGCATAAACACCAGATAAGTTTAGACTGAAGCCTAGGAACCGATTGTCTGGGGTACCATCGTCTCCAGGGGGCAGTCCGGCGCCCAAGGGCTTCCCCCATGTGGCATCACAGGCAGGCAAGGATTGGGTCTGAGGTTGAACCgtgtcccctctctccccccacctgttccacacacacacccctccctcACTCCTCCTTCTCCGAGCCGCTCTGCTGCCGGGCGCTGACGCTCTGGCCATATCTCTCCGTCAGATGCACACCCAGCCGGGAGAGGCGGTACCAGCCGGGAAACACCACTGTCATATCGGCTGTGTTGCCAAAACGTTACACAAGAACACACGTGATCAATAAACACAGTGCGTGTAGGGGGGATGTTAAACGAACGCAATGTCCTGTCATTTTAACCTTTATAGTTGGTTCTGGGGGAAATCAGTGACAGCCAATAAGAATCTATTCTCCTGAACATGTGACTCCcctggtctgtgtgtctctgtctctctttcagtCTTCTGCATCTAatgttctctctccctccctgtctccctctctgtctgtctgttgtctctgtctgtgtctccctctccgtctctctctctctctctgaacgTCTGTGTGACTCTGAGGTGTCCATCCAAGGTGGCGTGGCTGACCTGCAGGGCATGGGACAGGCAGCCGCTGGTGAAGGTGCTGTGCCCCACTGTGTCGAGAGCCTCCCGTGCGTAGTCTGATGCGCGCTTAACCAGCGGGGACACGGGCAGGTTGCCAGTCATGTTAGTAGAGACCATGAAGGGAGTCACACTGCACAGTGACGCCCCGGGACCGGTACTCCGCATGCAGACACCTGGAGAAGTAGGTCAAGAAGATCTGGAGAGAGGGATAGAGTGTGTCATTGTGTAGGTACAGTCTCTGTGTGGATCGTAGTGTGGTCTATATAGCGCCTCACCTTGCTGGCAGAGTACAGAGTGAGTAGGGGCTGGGGCCGGGAGGCGGCCTCTGAGGAGATATTGATGATCAGCCCTCGACCcctgagggagagggggagggagcagtGAGGACAGTGCAGGTATTCATTGTTCAGAAATAATAACACGGATTAGAGTTACTGATTAAATCACTATTCTAGTCAAATAGATGGACGGACAGACAGCCATGGACaaatagagacagacagaccgagAGATGGGGAGACATTTCAGCAGTGACGTACCTGTCAATCATCTGTGGTAGAACAATTCTGCTCATCtaaggagagacagacagtcagacaaacacactacacactcacattcacacactacacactcacacaaacacatggcaCTTGCAGACTGACCTGTGTGACTGACAGGATGTTACAGTTGATCAGCTGAGTGATTCTCTGTAGGAACACAAGActgtcaggagagagagagagagggggggggggggctgcactctcacacacaaactctggactcctgagaatgcaccagtacaaacccagctgtattaATGGGTCATTGTGTGTCAAAATACAGTAACACATTGTAACAATCGCCCAGGATAAGAAGAACATCtgataagaaatgtaataattataaaaaataatatagagagggggagggagggagatttGAGAAGTTCAAAAGAAAGTTGCAACAGAAATAAGGACAGACTGTATCAGAATGGTAGAGCAGGtgggggaaagagggagggagggagaggggccAGGGGCAGCTGTACCTCTTCGGCGTTGGGGACGTCCAGGAAGTGAGCCAACTTTGACGTGTAATTCATTCCAACATtgttcactgagagagagggagagggagagggatggtATGTTGATGAACATGTTATGTAAGTGACTCTCAGtgggacagacagacggacagacaggcGGAGGCGCTGTACCCAGGATGCCAATGTCCAGGCCGGTCAGTGCGCTGGCGATGCCGGGGTAGATGCCCCCTCCCTCGGTAAAATCAGCCTGCAGCACCTGCACTGCGCAGCCATACTGAGACGCTGAGAgcgggggagggagagggagagggaagagggTAACAAAATTCAAAGATCACAAagtccctccctccccctccatctctccatctctctctctttctctctccccctcttccctGTCTGGGCCATAGAGCCCTGATCTCCCCATTCTGCACAggttttttcctctctctctctctctctctctctctctctctctctctctctctcactctctctcacctaTCTCCCGTGCTGCTGCCTGCAGTCTCTCTGCTGACCTGCTGATCAGAACCACGTCCAGCCCCCTCCTGGCCAGCTGTCAACACGCAGCACACACAATGTGACACAACAGTGCACAGCAGCACACGACATCACACACACTGCTACGCAACACTACTCGACATATAAAGCATTACCTGACAAATACAACCTCACAACACTGTTCACAAGACACGGTGCTACACAGCACACAATACGCATCAGTGCACAACACTGACAACAgtgttaattagttaattgcttaattgatcccATACCTCGTCAGCGTAGGCTCTCCCGATCCCCGAGGTTGCCCCTGTAACCACTACCCGGCAAAGAAGATAACAACATGGATTAAAATCAGAACATtcagtctccctctccctctcccaggaGATGAGCAGCACAGTAAACAACAGCCATGGCCCGTGTGCCTGACAGTCATCCGGCCCCTCCCTGGATGACAATCGGGGCAGGAAAGTGTTGTTCGGTTGGATACAACCCCCCCGCTGTGTTATTACCACACATTCCATCGCTCTATCACAGTGTTCTATCGCTTTATCACAGTGCTCTATCACAGTGCTTCATCGCTGCTCTACCAGTCTGTGTCTGgctgtgcccccccccctctgtttcactgcagagagagaaagacagagagggggaaatatttactgtaaaaattgcccagtccagtccactccaGTCCCCTCACACAGCTCAGTCACTATAGTCCACACCAGTCACACAGCCCAGTCACCATAGTCCAGTCACTATAATCAGGTCAATATGATCCAGTCCCCCACACAGCCCAGTCACTATAGTCCAGTCCACTCCAGTCCCCTCACACAGCCCAGTCACTGTAGTCCAGTGGTCTCCagacctggtcctggagagacccAATCCACTTCATTTTATAGGTCACCAATATCTAAACACTGGGAACACACAGGAgtcattaatcaattaagcaactcaacCCAGGGATTTTTTGACTGGTTTCTAAAGGACTGTTTACCTGCTTCGTTGTTTGCAATTAACTACTTGCAGGTGTTTATGTTGGTGCTAGAAGGgtgacctccaaaacctgctggataggggctgtcctgtgcagtgcagtccagtcctgtcctgtcctgtccagTCACATCGACTGAATCCATCATGCACTTTAGTCACTGAATGAGTCAGTCGATCTGCTGCTCACCTGCCCACCGCCCGTACCGCCGCAAGTCTGTGCTCCAGTACTGTGACAGGATGTAGCTCCTGATCCCGACCCAGCAGCCCCAGCCGAACCGGACCAGCCACACGGCCAGGGTCAGAGCTCCGATCGCGGCCAGAACCGGTACCAGCGCCCCGCTGCCTCCGTCCCCGGGCATAACGCCTCACGACccgacctgtgtgtgtgtgagagagagagatcttgtCTCTTTAAAGACCGTACaccggtctctctctctctctctctctctctctctctctctctctctctctctccgtct

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164818 lncRNA downstream 27645 665377 ~ 666287 (-) True G131456
TU164788 lncRNA downstream 63507 627331 ~ 630425 (-) True G131437
TU164778 lncRNA downstream 133599 550039 ~ 560333 (-) True G131428
TU164765 lncRNA downstream 231235 461410 ~ 462697 (-) True G131426
TU164469 lncRNA downstream 333329 360230 ~ 360603 (-) True G131244
TU164846 lncRNA upstream 75789 774177 ~ 837898 (-) False G131471
TU164842 lncRNA upstream 136289 834677 ~ 837898 (-) False G131471
TU164843 lncRNA upstream 137181 835569 ~ 837898 (-) True G131471
TU164862 lncRNA upstream 149682 848070 ~ 854045 (-) True G131477
TU164859 lncRNA upstream 191895 890283 ~ 943901 (-) True G131475
AMCG00011599 mRNA downstream 2924 687131 ~ 691008 (-) True AMCG00011599
AMCG00011595 mRNA downstream 37627 655420 ~ 656305 (-) True AMCG00011595
AMCG00011594 mRNA downstream 74393 613140 ~ 619539 (-) True AMCG00011594
AMCG00011590 mRNA downstream 319742 373364 ~ 374190 (-) True AMCG00011590
AMCG00011588 mRNA downstream 373304 314019 ~ 320628 (-) True AMCG00011588
AMCG00011597 mRNA upstream 1430 699818 ~ 720407 (-) True AMCG00011597
AMCG00011598 mRNA upstream 24696 723084 ~ 731850 (-) True AMCG00011598
AMCG00011601 mRNA upstream 91620 790008 ~ 810157 (-) True AMCG00011601
AMCG00011602 mRNA upstream 261718 960106 ~ 965129 (-) True AMCG00011602
AMCG00011603 mRNA upstream 300603 998991 ~ 1006137 (-) True AMCG00011603
TU164816 other downstream 26622 665377 ~ 667310 (-) False G131456
TU164750 other downstream 278778 414517 ~ 415154 (-) True G131420
TU164448 other downstream 390017 302684 ~ 303915 (-) False AMCG00011589
TU164834 other upstream 14760 713148 ~ 720282 (-) False AMCG00011597
TU164850 other upstream 91631 790019 ~ 796419 (-) False AMCG00011601
TU165094 other upstream 1009329 1707717 ~ 1719226 (-) True AMCG00011645
TU165095 other upstream 1009329 1707717 ~ 1719226 (-) False AMCG00011645
TU165376 other upstream 1595245 2293633 ~ 2296453 (-) True G131863

Expression Profile