RNA id: TU164842


Basic Information

Item Value
RNA id TU164842
length 779
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G131471
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 774177 ~ 837898 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtgtgtgtgtggctttatatctatatagtgtgtgtgtgtgtgtgtggatttatatctatatactgtgtgtgtgtgtggctttatatctatatatatatactgtgtgtgtgtatatttatatatagtgtgtTCAGCAGCACAATCCCGGCTCACAGAGGGAGCACATGCTGATCTCGACAGGCTCGCACTGCGGCTGGATGCACATGTGATGAAGACGACACACGTTTGACCCAGATGgattaaacacacaacaaaaatccCAGATCGGATCCCCGCGGCAGACGCCGAGCTGAAACAAAGACAAGGTAAAACTTGCATTTAATCAGACAATGTCTGCGTTTACATATGTTGTGTGTTATAAGGAAAGGAAATGTTATATGATGttcaaatactgaaaatacattacagtaacTGAGATGTAAGATTGATGAAGCGCACTAACTGTTAATATGAGAAACCGCAACACTGAGATATTGCCAGAGATCGTCTATTTAAACAAGACAGTCAACCACCTATTTAACATTGGAACTTCTGTCTTATCCGAAGCTGTGCATTATGGGAGTCACAGAGTTCTGGTGGCGCTTTTCTCCCTATCTATATAATGGaaacctgcctcatttcatattcaaagctttctttttaaaaaacaaatgcattttttaacatgatGCACCAGGATTGTATTAGTGACACTCCTCCTTAACATATTCCAGTTATTATTTCAACTCAAAGTAGTTTCACCTGCACTGACGAGTGCTTTATTGCTGACGTGCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164759 lncRNA downstream 78978 459510 ~ 755699 (-) True G131425
TU164823 lncRNA downstream 136289 693932 ~ 698388 (-) True G131460
TU164818 lncRNA downstream 168390 665377 ~ 666287 (-) True G131456
TU164788 lncRNA downstream 204252 627331 ~ 630425 (-) True G131437
TU164778 lncRNA downstream 274344 550039 ~ 560333 (-) True G131428
TU164862 lncRNA upstream 10172 848070 ~ 854045 (-) True G131477
TU164859 lncRNA upstream 52385 890283 ~ 943901 (-) True G131475
TU164890 lncRNA upstream 162015 999913 ~ 1000485 (-) False AMCG00011603
TU164901 lncRNA upstream 257131 1095029 ~ 1176142 (-) True G131507
TU164903 lncRNA upstream 259372 1097270 ~ 1098796 (-) True G131508
AMCG00011601 mRNA downstream 24520 790008 ~ 810157 (-) True AMCG00011601
AMCG00011598 mRNA downstream 102827 723084 ~ 731850 (-) True AMCG00011598
AMCG00011597 mRNA downstream 114270 699818 ~ 720407 (-) True AMCG00011597
AMCG00011599 mRNA downstream 143669 687131 ~ 691008 (-) True AMCG00011599
AMCG00011595 mRNA downstream 178372 655420 ~ 656305 (-) True AMCG00011595
AMCG00011602 mRNA upstream 122208 960106 ~ 965129 (-) True AMCG00011602
AMCG00011603 mRNA upstream 161093 998991 ~ 1006137 (-) True AMCG00011603
AMCG00011611 mRNA upstream 314528 1152426 ~ 1154789 (-) True AMCG00011611
AMCG00011608 mRNA upstream 326870 1164768 ~ 1176860 (-) True AMCG00011608
AMCG00011610 mRNA upstream 340902 1178800 ~ 1180631 (-) True AMCG00011610
TU164850 other downstream 38258 790019 ~ 796419 (-) False AMCG00011601
TU164834 other downstream 114395 713148 ~ 720282 (-) False AMCG00011597
TU164816 other downstream 167367 665377 ~ 667310 (-) False G131456
TU164750 other downstream 419523 414517 ~ 415154 (-) True G131420
TU164448 other downstream 530762 302684 ~ 303915 (-) False AMCG00011589
TU165094 other upstream 869819 1707717 ~ 1719226 (-) True AMCG00011645
TU165095 other upstream 869819 1707717 ~ 1719226 (-) False AMCG00011645
TU165376 other upstream 1455735 2293633 ~ 2296453 (-) True G131863
TU165669 other upstream 1623209 2461107 ~ 2461750 (-) True G132117
TU165693 other upstream 1728847 2566745 ~ 2577837 (-) True G132140

Expression Profile