RNA id: TU165437


Basic Information

Item Value
RNA id TU165437
length 386
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G131913
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2328597 ~ 2328982 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcatggcctgtcggccggggcccgccgaccgtgttccctgtgaagccgtccatcaaggttctggggatcacgatcgacgggaccaacacgggcacccggagctgggaggaggccTTATCTAATGTCCAAAGGAAGATCCatggctggagcacaaggaccttgacaatggctggtaaggtgctggtcgtaaaggccatcctcttcccgatactcCTCTACGTAGGaatgatcttccccccagacaagatcatcgcaaaactagtgaccagaattatatttcggtttgtctgggggagcaaaatggagaggctgaaaagagtgcagatggtgaagggtaccctggatggaggcaggggggtcccggacgttgtgcggctTATAAAGGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165433 lncRNA downstream 889 2327127 ~ 2327708 (-) True G131909
TU165428 lncRNA downstream 8599 2317940 ~ 2319998 (-) True G131905
TU165378 lncRNA downstream 30113 2286869 ~ 2298484 (-) True G131864
TU165409 lncRNA downstream 36111 2289510 ~ 2292486 (-) True G131889
TU165403 lncRNA downstream 50081 2278233 ~ 2278516 (-) True G131884
TU165624 lncRNA upstream 86501 2415483 ~ 2447423 (-) True G132078
TU165668 lncRNA upstream 130766 2459748 ~ 2459961 (-) True G132116
TU165679 lncRNA upstream 163361 2492343 ~ 2499180 (-) True G132126
TU165682 lncRNA upstream 182521 2511503 ~ 2515213 (-) True G132129
TU165690 lncRNA upstream 221474 2550456 ~ 2551120 (-) True G132137
AMCG00011692 mRNA downstream 11009 2313629 ~ 2317588 (-) True AMCG00011692
AMCG00011683 mRNA downstream 55791 2268583 ~ 2272806 (-) True AMCG00011683
AMCG00011682 mRNA downstream 60408 2267971 ~ 2268189 (-) True AMCG00011682
AMCG00011677 mRNA downstream 90079 2236917 ~ 2238518 (-) True AMCG00011677
AMCG00011680 mRNA downstream 97524 2226336 ~ 2231073 (-) True AMCG00011680
AMCG00011690 mRNA upstream 7683 2336665 ~ 2337853 (-) True AMCG00011690
AMCG00011693 mRNA upstream 26697 2355679 ~ 2358344 (-) True AMCG00011693
AMCG00011691 mRNA upstream 33222 2362204 ~ 2365994 (-) True AMCG00011691
AMCG00011697 mRNA upstream 58630 2387612 ~ 2393372 (-) True AMCG00011697
AMCG00011698 mRNA upstream 74989 2403971 ~ 2416596 (-) True AMCG00011698
TU165376 other downstream 32144 2293633 ~ 2296453 (-) True G131863
TU165094 other downstream 609371 1707717 ~ 1719226 (-) True AMCG00011645
TU165095 other downstream 609371 1707717 ~ 1719226 (-) False AMCG00011645
TU164850 other downstream 1532178 790019 ~ 796419 (-) False AMCG00011601
TU164834 other downstream 1608315 713148 ~ 720282 (-) False AMCG00011597
TU165669 other upstream 132125 2461107 ~ 2461750 (-) True G132117
TU165693 other upstream 237763 2566745 ~ 2577837 (-) True G132140
TU165695 other upstream 237763 2566745 ~ 2577837 (-) False G132140
TU165699 other upstream 284497 2613479 ~ 2614515 (-) False AMCG00011711
TU165709 other upstream 313772 2642754 ~ 2643456 (-) True AMCG00011708

Expression Profile