RNA id: TU165616


Basic Information

Item Value
RNA id TU165616
length 1273
RNA type TUCP
GC content 0.47
exon number 2
gene id G132072
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2938370 ~ 2941171 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCCTGACACTTTTATTGGCAAACAATTTAATACACCACAGTCTCAGCAGACTGGGTACAGACGCCACCTAGTGGTCTCCTATaggcaaaacaatatttaaaggcACAGGTCATACACACTGATTCCAAGTGTGTTTAAGCTCTGATTGGCTTTTTAATGCTTTTCTAACAGAGGGTACATTAATATCCACTCATCTGTGAAACACAATGGTGTAAACAACAGAAAATCCAATTggcacacatatacaaataaataaaaaagtaatgaattcacaggaaattaagtttaattagaGGCCCATTATGAAGGCACAGTCGTGTTCAATTAAACCGTAAAATCACACGCTGTCACAGTCAGCTGGAGGACAGTCGGACATCAGTTGATATGGAGAAGATTTTCTTGAGTGGAGGGCACGGGTGTATTTGTacacatctgtctctctctccatccctctctcttttaaaagccgtaaacattttcaatactgGGGTACCTTTCAAGGGGTTTCTTTGTTTAGTGTAGCAAGTGCATGTGCATTTCATGTtcggaaagagagagaaagagagagcaacACACAGCCAACCCAGGGGACTGCAGCAAACTCCACAAaccacttacacacacacacagatcagagCAGATTGTGGAAGCAAACGGCCATGTTGGGATATTTGAAAGACAAGTTTTTTCATCGTTATGCAAGTGaaatttgttaaaaacaaaagaaaaagacagtgCTGCAATTTActtgtgtgtgcgtctgtgtgtgggAGGGTCGATTTAATGAACAATTACTTtagtgcaattaaaatacagaccAGAACGACAGGTGAGGAAGAGACAGAgctaaagagagagaaactgaacaTGTTGGGCATAAGAATTCGCACCGAGTGGATgatgggtgggtgggtgggaaTTTTAAACATCCTCTCTGAGGATCCCACTGTTGTTGCCCCCGCAGATGCACACGCACAGCAAGGCACAGCACCCCCCCACGAGCAGCACCCCCAGCAGGATGTACACCAGGGTGGTCGTCCAGAAGGCGAACAGCCCCTTACCTGTGATGAACCagcagaagaggaagagggacGCCAGCGATGTCCAGGTGGTGCAGACGTTGCCCAGCAGCCCCCCGGTGCCGCCCTCTTCCTCGTTCTTAGTGCAGGGCAGGCAGGCCAGCAGGCTGAGGGCCACCGTGAAGACCCCCGAGACCACCAGGTAGATGGGGATGTAGCGCTGGCGGGGGCAGTCGTGCAGGTACAGCACgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165526 lncRNA upstream 239337 2698214 ~ 2699033 (+) False AMCG00011713
TU165522 lncRNA upstream 276819 2661257 ~ 2661551 (+) True G131992
TU165518 lncRNA upstream 290930 2645548 ~ 2647440 (+) True G131988
TU165513 lncRNA upstream 303420 2634331 ~ 2634950 (+) True G131983
TU165500 lncRNA upstream 387333 2550392 ~ 2551037 (+) False AMCG00011702
TU165794 lncRNA downstream 47575 2988746 ~ 2989007 (+) True G132215
TU165841 lncRNA downstream 137249 3078420 ~ 3083327 (+) False AMCG00011735
TU165861 lncRNA downstream 162989 3104160 ~ 3115307 (+) True G132268
TU165865 lncRNA downstream 228567 3169738 ~ 3171228 (+) True G132270
TU165866 lncRNA downstream 228567 3169738 ~ 3250107 (+) False G132270
AMCG00011723 mRNA upstream 196 2930262 ~ 2938174 (+) True AMCG00011723
AMCG00011718 mRNA upstream 81625 2852817 ~ 2856745 (+) False AMCG00011718
AMCG00011717 mRNA upstream 126707 2805091 ~ 2811663 (+) True AMCG00011717
AMCG00011712 mRNA upstream 156072 2777860 ~ 2782298 (+) True AMCG00011712
AMCG00011714 mRNA upstream 193797 2734189 ~ 2744573 (+) True AMCG00011714
AMCG00011724 mRNA downstream 23059 2964230 ~ 2974831 (+) True AMCG00011724
AMCG00011733 mRNA downstream 128670 3069841 ~ 3074129 (+) True AMCG00011733
AMCG00011735 mRNA downstream 137246 3078417 ~ 3101137 (+) True AMCG00011735
AMCG00011740 mRNA downstream 169441 3110612 ~ 3111553 (+) True AMCG00011740
AMCG00011738 mRNA downstream 185353 3126524 ~ 3128860 (+) True AMCG00011738
TU165599 other upstream 58110 2877274 ~ 2880260 (+) True G132058
TU165585 other upstream 80086 2852870 ~ 2858284 (+) True AMCG00011718
TU165511 other upstream 322309 2615453 ~ 2616061 (+) True G131981
TU165418 other upstream 618337 2318010 ~ 2320033 (+) True G131898
TU165322 other upstream 671566 2265634 ~ 2266804 (+) False AMCG00011676
TU165804 other downstream 60261 3001432 ~ 3004662 (+) True G132221
TU165868 other downstream 260203 3201374 ~ 3204597 (+) True G132271
TU166214 other downstream 951210 3892381 ~ 3896179 (+) False AMCG00011770
TU166218 other downstream 962504 3903675 ~ 3938392 (+) False AMCG00011771
TU166232 other downstream 1000762 3941933 ~ 3943362 (+) False AMCG00011771

Expression Profile