RNA id: TU165693


Basic Information

Item Value
RNA id TU165693
length 1157
RNA type TUCP
GC content 0.51
exon number 2
gene id G132140
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 2566745 ~ 2577837 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaataagtctGTGTGAAAGAGAGCCCAAGACCAGTTCAGTGTGTCATTGGACAGTCATTTATTCAGAATATCTGGGTAAAGAGTATAGACCAAAACAAAGCAGTAAAGTTAGTAAAGACAACAACACTTAGAACTTTTATTGCCCTCACTGGAAAAGATGGTCTTCTATGTTATATAGCGATGCGAACACTTCTTGTGCCAGCGATTGACTCTGCTGGCCGTTACCCCCCTGCTTCTCTTTCTTCCACACCGTGTGTCCGATGAAGTGCAGCCACATGCTGTCGTTGCTGAGATACTGCCCCACCTCCGACTTCGGGATCAGGTCTTCCTCTCTGTTCTCTTGCCCTGGTTTGGTGTCAAACGTTCTCACGCCAGTGACGAACCAGCTGCCGTTGTGGAAGCTCTGCAGCAGCACCGTCAGGCTGTGTTCGTGGGGATCCTGCTGCCCGTTGCACTGCTCTACTCTCCATGTCAGTGCTCTGTTGTTACTTTCCTTCTGGACATATTTGGTTCTGCTGTGTCTGCTATGTAGGTCATACTTTTTCTCCACAACCGTTATGGTTTCTCCTTTGGGGTGAAATGTGAGGGCCCATGCACAGTCCGCCAGCATGGCCTTGGACCTGAATTTGATGTTGTGCGCTTGTTTGGCCTGATCGCTGTATCCGTGTATCTGCCACCGAGTCCCGTTGTCGGTGGATTTGTAGAGCCGCGGGGAGAACGCAGCCGAACTGACAGTGTTGTTCTGGCTGAGGATTTCGATATCCACTGAGTTGGCCTGGTAGGTCAGGACGCCCTGTTTCTCAATATACCTGCAGATGTCTGTGTCCCCTTTATGCCCAGCCTGGTAGTGATAGAGCTCGTTGGCTTTAATCATGGGGAACCTTATGTGCTGCAGTACAGTGGGGGTCTCCTCTGGGTGGCCCGCCAGCCAGTCAACAGCGGCCTTTAACAAAGTCATTTCGCTCTCCACGANNNNNNNNNNNCTTTGGAGAAGGTCGCACAGGTAAGCGGAGTCAATGGACCTCCAGACAGGAGAATGGATCACTGTGTCCATATTCCAGGCAATGAATCTATCACAGGCTTCCTTCAGCTCGGTGAGGTCAGCCAGTTTGGCGTATTGTCTCCACTGGATGGCTCGGTTACACTTGCCCGGTGTG

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165691 lncRNA downstream 13486 2552358 ~ 2553259 (-) True G132138
TU165690 lncRNA downstream 15625 2550456 ~ 2551120 (-) True G132137
TU165682 lncRNA downstream 51532 2511503 ~ 2515213 (-) True G132129
TU165679 lncRNA downstream 67565 2492343 ~ 2499180 (-) True G132126
TU165668 lncRNA downstream 106784 2459748 ~ 2459961 (-) True G132116
TU165706 lncRNA upstream 56459 2634296 ~ 2634952 (-) True G132151
TU165710 lncRNA upstream 67736 2645573 ~ 2647388 (-) True G132155
TU165724 lncRNA upstream 147830 2725667 ~ 2726283 (-) True G132166
TU165817 lncRNA upstream 423200 3001037 ~ 3042256 (-) True G132233
TU165850 lncRNA upstream 500694 3078531 ~ 3089532 (-) False G132261
AMCG00011703 mRNA downstream 56053 2496064 ~ 2510692 (-) True AMCG00011703
AMCG00011700 mRNA downstream 81015 2481091 ~ 2485730 (-) True AMCG00011700
AMCG00011699 mRNA downstream 93438 2468228 ~ 2473307 (-) True AMCG00011699
AMCG00011698 mRNA downstream 150149 2403971 ~ 2416596 (-) True AMCG00011698
AMCG00011697 mRNA downstream 173373 2387612 ~ 2393372 (-) True AMCG00011697
AMCG00011709 mRNA upstream 14022 2591859 ~ 2599202 (-) True AMCG00011709
AMCG00011711 mRNA upstream 31891 2609728 ~ 2617328 (-) True AMCG00011711
AMCG00011710 mRNA upstream 61626 2639463 ~ 2641522 (-) True AMCG00011710
AMCG00011708 mRNA upstream 64826 2642663 ~ 2643127 (-) False AMCG00011708
AMCG00011707 mRNA upstream 78392 2656229 ~ 2656728 (-) True AMCG00011707
TU165669 other downstream 104995 2461107 ~ 2461750 (-) True G132117
TU165376 other downstream 270292 2293633 ~ 2296453 (-) True G131863
TU165094 other downstream 847519 1707717 ~ 1719226 (-) True AMCG00011645
TU165095 other downstream 847519 1707717 ~ 1719226 (-) False AMCG00011645
TU164850 other downstream 1770326 790019 ~ 796419 (-) False AMCG00011601
TU165699 other upstream 35642 2613479 ~ 2614515 (-) False AMCG00011711
TU165709 other upstream 64917 2642754 ~ 2643456 (-) True AMCG00011708
TU165967 other upstream 591871 3169708 ~ 3173836 (-) False AMCG00011741
TU165963 other upstream 591924 3169761 ~ 3173836 (-) True AMCG00011741
TU165964 other upstream 591924 3169761 ~ 3173836 (-) False AMCG00011741

Expression Profile