RNA id: TU165804



Basic Information


Item Value
RNA id TU165804
length 295
RNA type TUCP
GC content 0.69
exon number 2
gene id G132221
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3001432 ~ 3004662 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTGCGCACTGAGCCGCCCAGCAGCCCGAGCAGCATGTCTCTGTCCCAGCGCTTCACACAGCGCCTGTCCTCGGCTCTGGCCGAGCTGATGAGAGCCGCTCAGTGTGCGGCGCGGAAGGCGCTGGCAGAGACGCTGGCGGAGCACCGAGAGGAGATGAGCCGAAGGCGGCGAGAGACCGAGAGGCTGCGCTGGAGGCTGCGGGAGCTGCGGGCGGCGAAGCGGAGTTTGAGAAGCGGCGGACACGGAGGAGGAGAGACCCCGGGAGCTGCCCTAGctcctgggggaggACAAGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU165794 lncRNA upstream 12425 2988746 ~ 2989007 (+) True G132215
TU165526 lncRNA upstream 302399 2698214 ~ 2699033 (+) False AMCG00011713
TU165522 lncRNA upstream 339881 2661257 ~ 2661551 (+) True G131992
TU165518 lncRNA upstream 353992 2645548 ~ 2647440 (+) True G131988
TU165513 lncRNA upstream 366482 2634331 ~ 2634950 (+) True G131983
TU165841 lncRNA downstream 73758 3078420 ~ 3083327 (+) False AMCG00011735
TU165861 lncRNA downstream 99498 3104160 ~ 3115307 (+) True G132268
TU165865 lncRNA downstream 165076 3169738 ~ 3171228 (+) True G132270
TU165866 lncRNA downstream 165076 3169738 ~ 3250107 (+) False G132270
TU165902 lncRNA downstream 233824 3238486 ~ 3245852 (+) True G132293
AMCG00011724 mRNA upstream 26601 2964230 ~ 2974831 (+) True AMCG00011724
AMCG00011723 mRNA upstream 63258 2930262 ~ 2938174 (+) True AMCG00011723
AMCG00011718 mRNA upstream 144687 2852817 ~ 2856745 (+) False AMCG00011718
AMCG00011717 mRNA upstream 189769 2805091 ~ 2811663 (+) True AMCG00011717
AMCG00011712 mRNA upstream 219134 2777860 ~ 2782298 (+) True AMCG00011712
AMCG00011733 mRNA downstream 65179 3069841 ~ 3074129 (+) True AMCG00011733
AMCG00011735 mRNA downstream 73755 3078417 ~ 3101137 (+) True AMCG00011735
AMCG00011740 mRNA downstream 105950 3110612 ~ 3111553 (+) True AMCG00011740
AMCG00011738 mRNA downstream 121862 3126524 ~ 3128860 (+) True AMCG00011738
AMCG00011737 mRNA downstream 136780 3141442 ~ 3152046 (+) True AMCG00011737
TU165616 other upstream 60261 2938370 ~ 2941171 (+) True G132072
TU165599 other upstream 121172 2877274 ~ 2880260 (+) True G132058
TU165585 other upstream 143148 2852870 ~ 2858284 (+) True AMCG00011718
TU165511 other upstream 385371 2615453 ~ 2616061 (+) True G131981
TU165418 other upstream 681399 2318010 ~ 2320033 (+) True G131898
TU165868 other downstream 196712 3201374 ~ 3204597 (+) True G132271
TU166214 other downstream 887719 3892381 ~ 3896179 (+) False AMCG00011770
TU166218 other downstream 899013 3903675 ~ 3938392 (+) False AMCG00011771
TU166232 other downstream 937271 3941933 ~ 3943362 (+) False AMCG00011771
TU166792 other downstream 2755196 5759858 ~ 5761248 (+) True AMCG00011830

Expression Profile