RNA id: TU165992


Basic Information

Item Value
RNA id TU165992
length 1716
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G132362
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3283821 ~ 3289291 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGGaagtaaagttagaaattcccctcacaaatggtttacttcatgtatacttaagaaagataaggtcaagtcaacagccaggccagaaggtagttcgacccctgtttgttattttcgatgagcatcttggagaagatgacaaacagtatgatttcaGTGTCTGCTCCTTAATCCTTGTATTGACCCATGGACTCTGTcctttaataatatattctgcttagcaagcttgtaagataacatagtaattacttattaattgtatccagatctttgttttctgtctataaaaagctctgacttttTACATGAAAGCAGAGCagctttgggatcttcttgattcactggtGTTCTCCATGTcacgtgtaataaaggcattgcaacgaacgttccaacctgattgaagatgattgttcttccacattACATGGCGACGAGGATCGGGACCGCTAACCCTGACGGAGAGGACCGGAGTGGCCAGACCAGTGACTAGCAAAGCCACCCCGGCAAAATATTAAGGACTGTCATCCATTTCAACCAGGTACATCAAAGCACACAAGAGAAAGTCCTCCCAGCAGCCCAGGTGGACAGGGCCCTACCAGGTGCTCCAGACCGCCCACACCGCTGTGAAGTGCCAAGAGAAACGACATGGATCCACTTGCCAATCAAAGCAATCAAAACAACACTGGTGGAGACCAGAGAGATGCTCCCCCTTCGACTAGATCCTCTTCCTCATTGCCTGTGGGACCATCTTCTGCACCATAACAGCCAGGGAAAGAGAGCGCTTCAGTGCCTAGCCAATGGGATCATCACTGATTGAGACAATCAGTCCAGAAGCAGCTGACATCATCATCCACCTCCAGCTAATGAGGCCAGCACAGGGCCAGACGCATGGGTCCACAAATACCGGGTGATGTGCTAGTAACCTCTCACCTTTTGCATattgacacacagacactatcACATTACACTGATCAAAAACGACTGAGGATTCGACAATGACGACAAAGCCACCTGATGAGAGAGAACACCCATCTCCAACTGTCCTACCAGTTTACTAAAAGACTTGAATATATCAGGGTGCTGAGTGTGCTCACATGTGCCCCACAGTGCTCTGTGAGGAATTCCCATGATCCCCATCCCTCTCACAGTTTGAAGACGTCTGTGCTGACCGGAACAGATACAATAGAAACATGATAAAACTGCTGATGTTGATAACGTAACAGCTGAAATGGTTCCCATATGGTGTTACAGAATTGCCAAGCCCTAGTTTTCTCTCTTGCAGCAAAAGGAGGGTGTGCACTCATTGGTAAAGAATGTTGTACCTATATACCTTATAACCTGAACAGATTCATGATCTTACAGATCACATTTGGAAAAAAGTAACTCAAATTCACCAGACCCTGGAGTGGTCTCTGGGGAGCTGGATAAGTGGATTCCTAGGAAACCTTGGTGCTCTTATAAGCCCAAGAATTGACTTGTATTCTTGGAATATTCatatttctctgttttgtgttgtttcagtgttgttgtgtttgcaCTGCCAAAGAAATGCAGATAAGCCTCACTCCTTCTGAAATGAAAgagtatgttaaaataatgaatgaagaaaTGCATGGTGGACAATATGTAACTTTACTGCTAGATGATATACacatgaatatatatgaatatgaatgttatGTATGTGCTGCTGTTCCCCATTCTGCAGACTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165979 lncRNA downstream 45908 3236273 ~ 3237913 (-) False AMCG00011745
TU165850 lncRNA downstream 194289 3078531 ~ 3089532 (-) False G132261
TU165852 lncRNA downstream 194289 3078531 ~ 3089532 (-) True G132261
TU165817 lncRNA downstream 241565 3001037 ~ 3042256 (-) True G132233
TU165724 lncRNA downstream 557538 2725667 ~ 2726283 (-) True G132166
TU166030 lncRNA upstream 130985 3420276 ~ 3432121 (-) True G132392
TU166033 lncRNA upstream 152104 3441395 ~ 3457472 (-) True G132395
TU166079 lncRNA upstream 278596 3567887 ~ 3568440 (-) True G132434
TU166134 lncRNA upstream 339471 3628762 ~ 3702912 (-) True G132482
TU166157 lncRNA upstream 464537 3753828 ~ 3785207 (-) True G132504
AMCG00011744 mRNA downstream 30242 3242200 ~ 3253579 (-) True AMCG00011744
AMCG00011745 mRNA downstream 43821 3236139 ~ 3240000 (-) True AMCG00011745
AMCG00011747 mRNA downstream 69005 3211724 ~ 3214816 (-) True AMCG00011747
AMCG00011746 mRNA downstream 76467 3203552 ~ 3207354 (-) True AMCG00011746
AMCG00011748 mRNA downstream 82246 3199687 ~ 3201575 (-) True AMCG00011748
AMCG00011751 mRNA upstream 54143 3343434 ~ 3348414 (-) True AMCG00011751
AMCG00011752 mRNA upstream 61162 3350453 ~ 3357400 (-) True AMCG00011752
AMCG00011753 mRNA upstream 74795 3364086 ~ 3391464 (-) True AMCG00011753
AMCG00011756 mRNA upstream 210349 3499640 ~ 3502460 (-) True AMCG00011756
AMCG00011758 mRNA upstream 226078 3515369 ~ 3520747 (-) True AMCG00011758
TU165976 other downstream 76467 3201370 ~ 3207354 (-) True G132352
TU165967 other downstream 109985 3169708 ~ 3173836 (-) False AMCG00011741
TU166201 other upstream 587755 3877046 ~ 3878397 (-) True AMCG00011765
TU166322 other upstream 875340 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 929258 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 1185314 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 1185314 4474605 ~ 4476979 (-) False G132693

Expression Profile