RNA id: TU166079


Basic Information

Item Value
RNA id TU166079
length 554
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G132434
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3567887 ~ 3568440 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCAGTCAAtcaggtttatttaaaaatacaatacaaaaagatACCCGTCATACATCTGGTTAGGACCACAGAAGCCCATTGATTTCCTGATTACAAGCAGTTATATTGTCCACCAAAAGAGGGTGCTATACAGTCCTCTCTTCCTATTGAAGCAAGCAGtgacacaaaagcaaaaacagccAAAAATAAAGATACACCGTTTTACACAGTCTGGGAAAATTCCATAACTTGTCTTAAACTAGACACTTTTATCTCCTCCCAATAAGTAGAGTTGTAGGAGCACCTGGTTTCGAGGTCTTGTTCTCAACAAATTTGGTGGGCTCTTAGTTTTACTTGGAAGTAACAAATGTTCACAAGATAATGAACAAAAGGCCAGTGTACTTCTTGCACATAGATATAATTAATATCACAAACCGAATAAAAGCAATGATTATACGTATTCAGAAAAGCATTgatcattcatattaaaaagcaatggtaaacatattaaagaaaagcGCTGGTCATTCATATTAACCCCACAGTTTGAAGGGGTTAACTATTCCTCCAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166033 lncRNA downstream 110415 3441395 ~ 3457472 (-) True G132395
TU166030 lncRNA downstream 135766 3420276 ~ 3432121 (-) True G132392
TU165992 lncRNA downstream 278596 3283821 ~ 3289291 (-) True G132362
TU165993 lncRNA downstream 278596 3283821 ~ 3289291 (-) False G132362
TU165979 lncRNA downstream 329974 3236273 ~ 3237913 (-) False AMCG00011745
TU166134 lncRNA upstream 60322 3628762 ~ 3702912 (-) True G132482
TU166157 lncRNA upstream 185388 3753828 ~ 3785207 (-) True G132504
TU166160 lncRNA upstream 219792 3788232 ~ 3788441 (-) True G132507
TU166162 lncRNA upstream 223779 3792219 ~ 3792505 (-) True G132509
TU166180 lncRNA upstream 230431 3798871 ~ 3799286 (-) True G132523
AMCG00011757 mRNA downstream 7201 3546833 ~ 3560686 (-) True AMCG00011757
AMCG00011758 mRNA downstream 47140 3515369 ~ 3520747 (-) True AMCG00011758
AMCG00011756 mRNA downstream 65427 3499640 ~ 3502460 (-) True AMCG00011756
AMCG00011753 mRNA downstream 176423 3364086 ~ 3391464 (-) True AMCG00011753
AMCG00011752 mRNA downstream 210487 3350453 ~ 3357400 (-) True AMCG00011752
AMCG00011760 mRNA upstream 44412 3612852 ~ 3620728 (-) True AMCG00011760
AMCG00011768 mRNA upstream 228245 3796685 ~ 3800396 (-) True AMCG00011768
AMCG00011766 mRNA upstream 232532 3800972 ~ 3802909 (-) True AMCG00011766
AMCG00011764 mRNA upstream 243086 3811526 ~ 3820077 (-) True AMCG00011764
AMCG00011767 mRNA upstream 273231 3841671 ~ 3846196 (-) True AMCG00011767
TU165976 other downstream 360533 3201370 ~ 3207354 (-) True G132352
TU165967 other downstream 394051 3169708 ~ 3173836 (-) False AMCG00011741
TU166201 other upstream 308606 3877046 ~ 3878397 (-) True AMCG00011765
TU166322 other upstream 596191 4164631 ~ 4166439 (-) True G132642
TU166351 other upstream 650109 4218549 ~ 4218983 (-) True G132667
TU166381 other upstream 906165 4474605 ~ 4476979 (-) True G132693
TU166383 other upstream 906165 4474605 ~ 4476979 (-) False G132693

Expression Profile