RNA id: TU166161


Basic Information

Item Value
RNA id TU166161
length 273
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G132508
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3792229 ~ 3792501 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgttgactatctccaagaatatggttatcattaagatgctcctctattttctgtctaatcatttttcccaacattttacaggtgatgcaggtgagactgattggtctgtaatttcctggctcagttttgtcctctttcttgtggattggtatgacatttgctgtcttccagtcagttggcacatcccctgttctaagtgtcatttggaatatttgagttagcggcctataaataatttccctcatttctttaagtactgttggaaatatccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166159 lncRNA upstream 3789 3788227 ~ 3788440 (+) True G132506
TU166132 lncRNA upstream 7033 3753947 ~ 3785196 (+) True G132480
TU166120 lncRNA upstream 78531 3693505 ~ 3713698 (+) True G132468
TU166117 lncRNA upstream 119792 3669681 ~ 3672437 (+) True G132466
TU166078 lncRNA upstream 223789 3567887 ~ 3568440 (+) True G132433
TU166164 lncRNA downstream 7810 3800311 ~ 3822313 (+) True G132510
TU166175 lncRNA downstream 48731 3841232 ~ 3841474 (+) True G132518
TU166215 lncRNA downstream 104053 3896554 ~ 3897596 (+) True AMCG00011770
TU166220 lncRNA downstream 111174 3903675 ~ 3977662 (+) False AMCG00011771
TU166241 lncRNA downstream 197926 3990427 ~ 3995729 (+) True G132573
AMCG00011759 mRNA upstream 124680 3661364 ~ 3667549 (+) True AMCG00011759
AMCG00011755 mRNA upstream 300674 3484762 ~ 3491555 (+) True AMCG00011755
AMCG00011754 mRNA upstream 343395 3448466 ~ 3448834 (+) True AMCG00011754
AMCG00011750 mRNA upstream 344382 3440089 ~ 3447847 (+) True AMCG00011750
AMCG00011749 mRNA upstream 380085 3409473 ~ 3412144 (+) True AMCG00011749
AMCG00011762 mRNA downstream 62908 3855409 ~ 3869281 (+) True AMCG00011762
AMCG00011761 mRNA downstream 90124 3882625 ~ 3889058 (+) True AMCG00011761
AMCG00011770 mRNA downstream 101211 3893712 ~ 3896735 (+) False AMCG00011770
AMCG00011769 mRNA downstream 119399 3911900 ~ 3914902 (+) True AMCG00011769
AMCG00011774 mRNA downstream 127168 3919669 ~ 3922626 (+) True AMCG00011774
TU165868 other upstream 587632 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 787567 3001432 ~ 3004662 (+) True G132221
TU165616 other upstream 851058 2938370 ~ 2941171 (+) True G132072
TU165599 other upstream 911969 2877274 ~ 2880260 (+) True G132058
TU165585 other upstream 933945 2852870 ~ 2858284 (+) True AMCG00011718
TU166214 other downstream 99880 3892381 ~ 3896179 (+) False AMCG00011770
TU166218 other downstream 111174 3903675 ~ 3938392 (+) False AMCG00011771
TU166232 other downstream 149432 3941933 ~ 3943362 (+) False AMCG00011771
TU166792 other downstream 1967357 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 2036300 5828801 ~ 5829532 (+) True G133059

Expression Profile