RNA id: TU166241


Basic Information

Item Value
RNA id TU166241
length 2055
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G132573
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3990427 ~ 3995729 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGgtgatgaggaggaggatgtAGAACAACTCCAGGATTATGCAAATTAGgttgagtcagtcagtcacaggggggtaaaaaaaaggacacagagatagagaggtttgacaaaaaacaacaggctGCCACCTGTCAGCCAATCAGCTTTATTCACCAGCCTGGGAGCTAACCAATCAACAAACAATACCCACAATGCCTCAgagcttttctcttttttaaattctccagcattttcttttcttgtggAACAGAAATTGGCGACGACGCACAATAACAGGAATGCacagtaatacaaaacaaacaagacaaacttctcaaataagttaaaatggaaataaagtgCTTCAACGCAGACTGGCGCcgattgttaaaaacaaacgtACATCCTACACGAGGAAAATAAAACGCAAACGGACCGAGAGGTCGAAAGAACAGAATCCTTTTTCGTTGTTTCCTTTGCTTGTCCAGTGGAGTGCTACCCTGGTCTCAGCGGTGATGGATGCATTGTTTTAGAGCTCAGAACCAGGTCATGTTCTGGTCACACATGCAGAGACTTTTCCTACAGGGTCACGTGTCCCTGTCTGGAATGTTCAGTATCTCTGTACCCCCCACAATTTTCATATAAATCCTGTTGACGTACCCATGAGAGATAGAGAAAGGCAAGTAGAGTGGACATATAGGGGAAACACTATGGAGGTAATTTAAAACTGTGCAAGAGACTGTGATAGTACAAGACAGGGACAGTAAAGAGTGAAAGTGTGAGTGTAAGACAGCATGTACACTGTCAATTATCCCAGAGGAGTGAAATCGACCGTCTCCATCTTCCACGACAACACAAGCCATcatgacagagagacagacgtGCACATACGCACAAAgatacacaggcacacacacgcacacatgcagaTACGCACGCACGCACTCAGACACGCACAAACTCACGGACAGGCATGCAGACAGTCCCACGCAGACACAGGCACGCACACGCCTGCTCACAAGCACGCGTGCAgatacacacaaagacacaggcACGTACACGCATGCTCACAGGCACACATGCAGACACGCacgctcacagacacacactcgcacacacacagagatactgAGGGATGAATCGGTATGAGGCTCGGAGGAGGAGAGTCTCGGTCTTAGCGTGTCTTTATCTCACCCTCATCGAAATCACGCCAACCcccacagtacagcacaggcaCACGTATACAGCACTCCAATCAACAGCATGTCATTCttagcagtattattattattgttaatatgaaTAGTAGTACTAATTAGTACTAGTTAGTACCATTTACTGGTGAAGTTGTGCTCCAATAAGTGTGTTCACTAGAggtgtatatgtacagtacagtgtctcAAATGAATGTctcaacaagaacaacaataactACCGTACAGACTCCAGCATGGTTTGTGTATTAGGACTGAACTGCGAACAGCCACAGGAACAAGTGGGGGCCCGTCTGGCTaacaaaacacactgactgCATCGGTACGAAACTCCACGTCTGTGAACCGACAGCATTTGTAAGAGCGAATCGTAATTCCAAGATGATTCGTCCCGTCCAGTCCGAGACACCTCCCCAAAACACAGCGGATGAcgtcaaataataatacaaaaaaaacacatacaaaaaaattaaataagtaaaaaaaaaaaaaaaaaaaacgcaattTCCAGTTCGCACCTGGAGTCCACCCAGTCGATGAAAAGTCTGTGTCTGTTGGCTACTGATACCTGTCCGTCCGTCCCTGTCTCTGTCCGTCCTTAACTGACAGGCTCCAGCACCAATACTTTGCACTCCCTCTTGGCGATCTTGTCCAGCGAGAGGACAGCTTTCTCCTGGGGGTGGTACAGCGGCCGGCCAATGGGGGAGCCCACAGGGGGCGTGATGGCCCGGCGCTCCATAACACTGCCGGTCCTGcaagggacagacagacagcaggggTCAGAGCTATACAGTCAGCTGTGCGGTGCGTGAACACTGAGGCATTGTGGGAGTCTGGAACAGTATTTATGGTACAGTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166220 lncRNA upstream 12765 3903675 ~ 3977662 (+) False AMCG00011771
TU166215 lncRNA upstream 92831 3896554 ~ 3897596 (+) True AMCG00011770
TU166175 lncRNA upstream 148953 3841232 ~ 3841474 (+) True G132518
TU166164 lncRNA upstream 168114 3800311 ~ 3822313 (+) True G132510
TU166161 lncRNA upstream 197926 3792229 ~ 3792501 (+) True G132508
TU166255 lncRNA downstream 20398 4016127 ~ 4017756 (+) True G132586
TU166266 lncRNA downstream 113784 4109513 ~ 4111930 (+) True G132596
TU166337 lncRNA downstream 222818 4218547 ~ 4218983 (+) True G132655
TU166343 lncRNA downstream 263815 4259544 ~ 4322290 (+) True G132660
TU166417 lncRNA downstream 756993 4752722 ~ 4752923 (+) True G132722
AMCG00011777 mRNA upstream 15288 3970320 ~ 3975139 (+) True AMCG00011777
AMCG00011776 mRNA upstream 25244 3947402 ~ 3965183 (+) True AMCG00011776
AMCG00011771 mRNA upstream 47528 3930635 ~ 3942899 (+) True AMCG00011771
AMCG00011774 mRNA upstream 67801 3919669 ~ 3922626 (+) True AMCG00011774
AMCG00011769 mRNA upstream 75525 3911900 ~ 3914902 (+) True AMCG00011769
AMCG00011782 mRNA downstream 169104 4164833 ~ 4172677 (+) True AMCG00011782
AMCG00011781 mRNA downstream 179706 4175435 ~ 4181132 (+) True AMCG00011781
AMCG00011785 mRNA downstream 247443 4243172 ~ 4249417 (+) True AMCG00011785
AMCG00011793 mRNA downstream 598231 4593960 ~ 4601353 (+) True AMCG00011793
AMCG00011794 mRNA downstream 650581 4646310 ~ 4648415 (+) True AMCG00011794
TU166232 other upstream 47065 3941933 ~ 3943362 (+) False AMCG00011771
TU166218 other upstream 52035 3903675 ~ 3938392 (+) False AMCG00011771
TU166214 other upstream 94248 3892381 ~ 3896179 (+) False AMCG00011770
TU165868 other upstream 785830 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 985765 3001432 ~ 3004662 (+) True G132221
TU166792 other downstream 1764129 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 1833072 5828801 ~ 5829532 (+) True G133059
TU166896 other downstream 1891276 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other downstream 1891276 5887005 ~ 5887892 (+) False AMCG00011837
TU167105 other downstream 2260221 6255950 ~ 6256682 (+) False AMCG00011876

Expression Profile