RNA id: TU166243


Basic Information

Item Value
RNA id TU166243
length 226
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G132574
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 3992264 ~ 3992904 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagaaATGACTATGAAGGACAGACAGATGTTGACAGCAcagtCCTGACTTCTTGTGACTTCAATGATGACGCTTCCCCGTTCTGTGACTTCCGGCAGGGGGGCGGCAACCACAGTGATTGGATACGGCACCGTGGCCCCACCCCCACCAATGGGACCAGTCCCAGTGGAGACTACCCCAGCGGCGGTGAGTGAGGGCTGCTGGGAGAGGACCACCTTGACGATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166220 lncRNA upstream 14602 3903675 ~ 3977662 (+) False AMCG00011771
TU166215 lncRNA upstream 94668 3896554 ~ 3897596 (+) True AMCG00011770
TU166175 lncRNA upstream 150790 3841232 ~ 3841474 (+) True G132518
TU166164 lncRNA upstream 169951 3800311 ~ 3822313 (+) True G132510
TU166161 lncRNA upstream 199763 3792229 ~ 3792501 (+) True G132508
TU166255 lncRNA downstream 23223 4016127 ~ 4017756 (+) True G132586
TU166266 lncRNA downstream 116609 4109513 ~ 4111930 (+) True G132596
TU166337 lncRNA downstream 225643 4218547 ~ 4218983 (+) True G132655
TU166343 lncRNA downstream 266640 4259544 ~ 4322290 (+) True G132660
TU166417 lncRNA downstream 759818 4752722 ~ 4752923 (+) True G132722
AMCG00011777 mRNA upstream 17125 3970320 ~ 3975139 (+) True AMCG00011777
AMCG00011776 mRNA upstream 27081 3947402 ~ 3965183 (+) True AMCG00011776
AMCG00011771 mRNA upstream 49365 3930635 ~ 3942899 (+) True AMCG00011771
AMCG00011774 mRNA upstream 69638 3919669 ~ 3922626 (+) True AMCG00011774
AMCG00011769 mRNA upstream 77362 3911900 ~ 3914902 (+) True AMCG00011769
AMCG00011782 mRNA downstream 171929 4164833 ~ 4172677 (+) True AMCG00011782
AMCG00011781 mRNA downstream 182531 4175435 ~ 4181132 (+) True AMCG00011781
AMCG00011785 mRNA downstream 250268 4243172 ~ 4249417 (+) True AMCG00011785
AMCG00011793 mRNA downstream 601056 4593960 ~ 4601353 (+) True AMCG00011793
AMCG00011794 mRNA downstream 653406 4646310 ~ 4648415 (+) True AMCG00011794
TU166232 other upstream 48902 3941933 ~ 3943362 (+) False AMCG00011771
TU166218 other upstream 53872 3903675 ~ 3938392 (+) False AMCG00011771
TU166214 other upstream 96085 3892381 ~ 3896179 (+) False AMCG00011770
TU165868 other upstream 787667 3201374 ~ 3204597 (+) True G132271
TU165804 other upstream 987602 3001432 ~ 3004662 (+) True G132221
TU166792 other downstream 1766954 5759858 ~ 5761248 (+) True AMCG00011830
TU166858 other downstream 1835897 5828801 ~ 5829532 (+) True G133059
TU166896 other downstream 1894101 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other downstream 1894101 5887005 ~ 5887892 (+) False AMCG00011837
TU167105 other downstream 2263046 6255950 ~ 6256682 (+) False AMCG00011876

Expression Profile